Gene : Glyma.15G173100 G. max Wm82.a2.v1
Defline:  (1 of 2) PF01476//PF10358 - LysM domain (LysM) // N-terminal C2 in EEIG1 and EHBP1 proteins (NT-C2) Genomic Order:  1731
Name:  ? Glyma.15G173100 Secondary Identifier:  ? PAC:30499976
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.15G173100 0.5kb upstream 0.5kb upstream 4238 true Chr15: 15871021-15875258 Glycine max
Glyma.15G173100 0.5kb upstream 0.5kb upstream 500 false Chr15: 15871021-15871520 Glycine max
Glyma.15G173100 0.5kb downstream 0.5kb downstream 4238 true Chr15: 15871521-15875758 Glycine max
Glyma.15G173100 0.5kb downstream 0.5kb downstream 500 false Chr15: 15875259-15875758 Glycine max
Glyma.15G173100 1.0kb upstream 1.0kb upstream 4738 true Chr15: 15870521-15875258 Glycine max
Glyma.15G173100 1.0kb upstream 1.0kb upstream 1000 false Chr15: 15870521-15871520 Glycine max
Glyma.15G173100 1.0kb downstream 1.0kb downstream 4738 true Chr15: 15871521-15876258 Glycine max
Glyma.15G173100 1.0kb downstream 1.0kb downstream 1000 false Chr15: 15875259-15876258 Glycine max
Glyma.15G173100 2.0kb upstream 2.0kb upstream 5738 true Chr15: 15869521-15875258 Glycine max
Glyma.15G173100 2.0kb upstream 2.0kb upstream 2000 false Chr15: 15869521-15871520 Glycine max
Glyma.15G173100 2.0kb downstream 2.0kb downstream 5738 true Chr15: 15871521-15877258 Glycine max
Glyma.15G173100 2.0kb downstream 2.0kb downstream 2000 false Chr15: 15875259-15877258 Glycine max
Glyma.15G173100 5.0kb upstream 5.0kb upstream 8738 true Chr15: 15866521-15875258 Glycine max
Glyma.15G173100 5.0kb upstream 5.0kb upstream 5000 false Chr15: 15866521-15871520 Glycine max
Glyma.15G173100 5.0kb downstream 5.0kb downstream 8738 true Chr15: 15871521-15880258 Glycine max
Glyma.15G173100 5.0kb downstream 5.0kb downstream 5000 false Chr15: 15875259-15880258 Glycine max
Glyma.15G173100 10.0kb upstream 10.0kb upstream 13738 true Chr15: 15861521-15875258 Glycine max
Glyma.15G173100 10.0kb upstream 10.0kb upstream 10000 false Chr15: 15861521-15871520 Glycine max
Glyma.15G173100 10.0kb downstream 10.0kb downstream 13738 true Chr15: 15871521-15885258 Glycine max
Glyma.15G173100 10.0kb downstream 10.0kb downstream 10000 false Chr15: 15875259-15885258 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041160 5273 Angiosperm View MSA
122298559 5265 Fabidae View MSA
124072926 5270 Rosid View MSA
123747985 5271 Pentapetalae View MSA
122787610 5272 Eudicot View MSA
121351734 5274 Embryophyte View MSA
123382297 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.40784 0.0 14.5163    
cufflinks 5.29993 0.0 14.2412    
cufflinks 5.92925 0.0 15.8592    
cufflinks 3.39723 0.0 9.3654   Low
cufflinks 5.00136 0.0 13.4698    
cufflinks 6.8205 0.0 18.2088   High
cufflinks 3.74241 0.0 10.2533   Low
cufflinks 5.56927 0.0 14.9309    
cufflinks 7.11272 0.0 18.9809   High
cufflinks 8.089     High  
cufflinks 6.356     High  
cufflinks 8.124     High  
cufflinks 7.64     High  
cufflinks 6.538        
cufflinks 9.027     High  
cufflinks 9.305     High  
cufflinks 5.867       Low
cufflinks 6.996        
cufflinks 10.004     High High
cufflinks 8.598     High  
cufflinks 5.351       Low
cufflinks 9.868     High  
cufflinks 12.878     High High
cufflinks 7.953     High  
cufflinks 8.11     High  
cufflinks 5.004       Low

0 Strain