Gene : Glyma.15G162500 G. max Wm82.a2.v1
Defline:  (1 of 330) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  1625
Name:  ? Glyma.15G162500 Secondary Identifier:  ? PAC:30497770
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.15G162500 0.5kb upstream 0.5kb upstream 3447 true Chr15: 13879669-13883115 Glycine max
Glyma.15G162500 0.5kb upstream 0.5kb upstream 500 false Chr15: 13882616-13883115 Glycine max
Glyma.15G162500 0.5kb downstream 0.5kb downstream 3447 true Chr15: 13879169-13882615 Glycine max
Glyma.15G162500 0.5kb downstream 0.5kb downstream 500 false Chr15: 13879169-13879668 Glycine max
Glyma.15G162500 1.0kb upstream 1.0kb upstream 3947 true Chr15: 13879669-13883615 Glycine max
Glyma.15G162500 1.0kb upstream 1.0kb upstream 1000 false Chr15: 13882616-13883615 Glycine max
Glyma.15G162500 1.0kb downstream 1.0kb downstream 3947 true Chr15: 13878669-13882615 Glycine max
Glyma.15G162500 1.0kb downstream 1.0kb downstream 1000 false Chr15: 13878669-13879668 Glycine max
Glyma.15G162500 2.0kb upstream 2.0kb upstream 4947 true Chr15: 13879669-13884615 Glycine max
Glyma.15G162500 2.0kb upstream 2.0kb upstream 2000 false Chr15: 13882616-13884615 Glycine max
Glyma.15G162500 2.0kb downstream 2.0kb downstream 4947 true Chr15: 13877669-13882615 Glycine max
Glyma.15G162500 2.0kb downstream 2.0kb downstream 2000 false Chr15: 13877669-13879668 Glycine max
Glyma.15G162500 5.0kb upstream 5.0kb upstream 7947 true Chr15: 13879669-13887615 Glycine max
Glyma.15G162500 5.0kb upstream 5.0kb upstream 5000 false Chr15: 13882616-13887615 Glycine max
Glyma.15G162500 5.0kb downstream 5.0kb downstream 7947 true Chr15: 13874669-13882615 Glycine max
Glyma.15G162500 5.0kb downstream 5.0kb downstream 5000 false Chr15: 13874669-13879668 Glycine max
Glyma.15G162500 10.0kb upstream 10.0kb upstream 12947 true Chr15: 13879669-13892615 Glycine max
Glyma.15G162500 10.0kb upstream 10.0kb upstream 10000 false Chr15: 13882616-13892615 Glycine max
Glyma.15G162500 10.0kb downstream 10.0kb downstream 12947 true Chr15: 13869669-13882615 Glycine max
Glyma.15G162500 10.0kb downstream 10.0kb downstream 10000 false Chr15: 13869669-13879668 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309903 5265 Fabidae View MSA
124065938 5270 Rosid View MSA
123738887 5271 Pentapetalae View MSA
122785902 5272 Eudicot View MSA
122051295 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121349652 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.77662 0.0 10.5876   High
cufflinks 2.94913 0.0 8.48565    
cufflinks 0.899071 0.0 3.02525   Low
cufflinks 2.02416 0.0 6.11855    
cufflinks 1.51843 0.0 4.8021    
cufflinks 1.01164 0.0 3.37071   Low
cufflinks 4.21101 0.0 11.6784   High
cufflinks 2.23046 0.0 6.64886    
cufflinks 2.07776 0.0 6.26212    
cufflinks 1.803        
cufflinks 0.197       Low
cufflinks 2.186        
cufflinks 1.449        
cufflinks 2.07        
cufflinks 0.527        
cufflinks 6.589       High
cufflinks 0.339       Low
cufflinks 2.39        
cufflinks 3.246        
cufflinks 8.836     High High
cufflinks 0.226       Low
cufflinks 8.464     High High
cufflinks 6.664       High
cufflinks 0.481        
cufflinks 6.788       High
cufflinks 0.317       Low

0 Strain