Gene : Glyma.15G202500 G. max Wm82.a2.v1
Defline:  (1 of 24) PF12854//PF13041 - PPR repeat (PPR_1) // PPR repeat family (PPR_2) Genomic Order:  2025
Name:  ? Glyma.15G202500 Secondary Identifier:  ? PAC:30497580
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.15G202500 0.5kb upstream 0.5kb upstream 3995 true Chr15: 25548066-25552060 Glycine max
Glyma.15G202500 0.5kb upstream 0.5kb upstream 500 false Chr15: 25551561-25552060 Glycine max
Glyma.15G202500 0.5kb downstream 0.5kb downstream 3995 true Chr15: 25547566-25551560 Glycine max
Glyma.15G202500 0.5kb downstream 0.5kb downstream 500 false Chr15: 25547566-25548065 Glycine max
Glyma.15G202500 1.0kb upstream 1.0kb upstream 4495 true Chr15: 25548066-25552560 Glycine max
Glyma.15G202500 1.0kb upstream 1.0kb upstream 1000 false Chr15: 25551561-25552560 Glycine max
Glyma.15G202500 1.0kb downstream 1.0kb downstream 4495 true Chr15: 25547066-25551560 Glycine max
Glyma.15G202500 1.0kb downstream 1.0kb downstream 1000 false Chr15: 25547066-25548065 Glycine max
Glyma.15G202500 2.0kb upstream 2.0kb upstream 5495 true Chr15: 25548066-25553560 Glycine max
Glyma.15G202500 2.0kb upstream 2.0kb upstream 2000 false Chr15: 25551561-25553560 Glycine max
Glyma.15G202500 2.0kb downstream 2.0kb downstream 5495 true Chr15: 25546066-25551560 Glycine max
Glyma.15G202500 2.0kb downstream 2.0kb downstream 2000 false Chr15: 25546066-25548065 Glycine max
Glyma.15G202500 5.0kb upstream 5.0kb upstream 8495 true Chr15: 25548066-25556560 Glycine max
Glyma.15G202500 5.0kb upstream 5.0kb upstream 5000 false Chr15: 25551561-25556560 Glycine max
Glyma.15G202500 5.0kb downstream 5.0kb downstream 8495 true Chr15: 25543066-25551560 Glycine max
Glyma.15G202500 5.0kb downstream 5.0kb downstream 5000 false Chr15: 25543066-25548065 Glycine max
Glyma.15G202500 10.0kb upstream 10.0kb upstream 13495 true Chr15: 25548066-25561560 Glycine max
Glyma.15G202500 10.0kb upstream 10.0kb upstream 10000 false Chr15: 25551561-25561560 Glycine max
Glyma.15G202500 10.0kb downstream 10.0kb downstream 13495 true Chr15: 25538066-25551560 Glycine max
Glyma.15G202500 10.0kb downstream 10.0kb downstream 10000 false Chr15: 25538066-25548065 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302229 5265 Fabidae View MSA
124066069 5270 Rosid View MSA
123753756 5271 Pentapetalae View MSA
122797794 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.825998 0.0 2.83506    
cufflinks 1.0439 0.0 3.47952    
cufflinks 1.04141 0.0 3.44961    
cufflinks 0.757232 0.0 2.61523    
cufflinks 0.516268 0.0 1.84707    
cufflinks 0.226338 0.0 0.846849 Low Low
cufflinks 0.91863 0.0 3.12351    
cufflinks 0.572606 0.0 2.02884    
cufflinks 0.836643 0.0 2.86669    
cufflinks 0.561        
cufflinks 0.583        
cufflinks 1.545        
cufflinks 0.547        
cufflinks 0.56        
cufflinks 0.93        
cufflinks 1.558        
cufflinks 0.511       Low
cufflinks 2.012       High
cufflinks 1.814       High
cufflinks 1.841       High
cufflinks 0.63        
cufflinks 1.783       High
cufflinks 1.654        
cufflinks 0.528        
cufflinks 1.755       High
cufflinks 0.386       Low

0 Strain