Gene : Glyma.15G194300 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR34195:SF2 - PHOTOSYSTEM I REACTION CENTER SUBUNIT PSAK, CHLOROPLASTIC Genomic Order:  1943
Name:  ? Glyma.15G194300 Secondary Identifier:  ? PAC:30499963
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PHOTOALL-PWY Glycine max pathologic  
Gmax PWY-101 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.15G194300 0.5kb upstream 0.5kb upstream 2939 true Chr15: 21577590-21580528 Glycine max
Glyma.15G194300 0.5kb upstream 0.5kb upstream 500 false Chr15: 21577590-21578089 Glycine max
Glyma.15G194300 0.5kb downstream 0.5kb downstream 2939 true Chr15: 21578090-21581028 Glycine max
Glyma.15G194300 0.5kb downstream 0.5kb downstream 500 false Chr15: 21580529-21581028 Glycine max
Glyma.15G194300 1.0kb upstream 1.0kb upstream 3439 true Chr15: 21577090-21580528 Glycine max
Glyma.15G194300 1.0kb upstream 1.0kb upstream 1000 false Chr15: 21577090-21578089 Glycine max
Glyma.15G194300 1.0kb downstream 1.0kb downstream 3439 true Chr15: 21578090-21581528 Glycine max
Glyma.15G194300 1.0kb downstream 1.0kb downstream 1000 false Chr15: 21580529-21581528 Glycine max
Glyma.15G194300 2.0kb upstream 2.0kb upstream 4439 true Chr15: 21576090-21580528 Glycine max
Glyma.15G194300 2.0kb upstream 2.0kb upstream 2000 false Chr15: 21576090-21578089 Glycine max
Glyma.15G194300 2.0kb downstream 2.0kb downstream 4439 true Chr15: 21578090-21582528 Glycine max
Glyma.15G194300 2.0kb downstream 2.0kb downstream 2000 false Chr15: 21580529-21582528 Glycine max
Glyma.15G194300 5.0kb upstream 5.0kb upstream 7439 true Chr15: 21573090-21580528 Glycine max
Glyma.15G194300 5.0kb upstream 5.0kb upstream 5000 false Chr15: 21573090-21578089 Glycine max
Glyma.15G194300 5.0kb downstream 5.0kb downstream 7439 true Chr15: 21578090-21585528 Glycine max
Glyma.15G194300 5.0kb downstream 5.0kb downstream 5000 false Chr15: 21580529-21585528 Glycine max
Glyma.15G194300 10.0kb upstream 10.0kb upstream 12439 true Chr15: 21568090-21580528 Glycine max
Glyma.15G194300 10.0kb upstream 10.0kb upstream 10000 false Chr15: 21568090-21578089 Glycine max
Glyma.15G194300 10.0kb downstream 10.0kb downstream 12439 true Chr15: 21578090-21590528 Glycine max
Glyma.15G194300 10.0kb downstream 10.0kb downstream 10000 false Chr15: 21580529-21590528 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314014 5265 Fabidae View MSA
124064022 5270 Rosid View MSA
123739111 5271 Pentapetalae View MSA
122786435 5272 Eudicot View MSA
122044551 5273 Angiosperm View MSA
121347312 5274 Embryophyte View MSA
123425033 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 238.379 0.0 848.921 High High
cufflinks 165.547 0.0 543.765 High High
cufflinks 59.1715 0.0 166.276 High  
cufflinks 75.1818 0.0 216.932 High  
cufflinks 7.56542 0.0 21.5425   Low
cufflinks 8.59488 0.0 24.1001   Low
cufflinks 65.5636 0.0 185.366 High  
cufflinks 73.0975 0.0 209.658 High  
cufflinks 5.73199 0.0 16.8527   Low
cufflinks 85.591     High  
cufflinks 0.997        
cufflinks 49.746     High  
cufflinks 0.202       Low
cufflinks 0.154       Low
cufflinks 1.515        
cufflinks 324.291     High High
cufflinks 0.133       Low
cufflinks 50.073     High  
cufflinks 96.521     High  
cufflinks 379.574     High High
cufflinks 0.95        
cufflinks 352.154     High High
cufflinks 264.264     High High
cufflinks 0.425        
cufflinks 375.852     High High
cufflinks 0.171       Low

0 Strain