Gene : Glyma.15G183500 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR12459:SF6 - TRANSMEMBRANE PROTEIN Genomic Order:  1835
Name:  ? Glyma.15G183500 Secondary Identifier:  ? PAC:30499893
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.15G183500 0.5kb upstream 0.5kb upstream 5615 true Chr15: 18266140-18271754 Glycine max
Glyma.15G183500 0.5kb upstream 0.5kb upstream 500 false Chr15: 18271255-18271754 Glycine max
Glyma.15G183500 0.5kb downstream 0.5kb downstream 5615 true Chr15: 18265640-18271254 Glycine max
Glyma.15G183500 0.5kb downstream 0.5kb downstream 500 false Chr15: 18265640-18266139 Glycine max
Glyma.15G183500 1.0kb upstream 1.0kb upstream 6115 true Chr15: 18266140-18272254 Glycine max
Glyma.15G183500 1.0kb upstream 1.0kb upstream 1000 false Chr15: 18271255-18272254 Glycine max
Glyma.15G183500 1.0kb downstream 1.0kb downstream 6115 true Chr15: 18265140-18271254 Glycine max
Glyma.15G183500 1.0kb downstream 1.0kb downstream 1000 false Chr15: 18265140-18266139 Glycine max
Glyma.15G183500 2.0kb upstream 2.0kb upstream 7115 true Chr15: 18266140-18273254 Glycine max
Glyma.15G183500 2.0kb upstream 2.0kb upstream 2000 false Chr15: 18271255-18273254 Glycine max
Glyma.15G183500 2.0kb downstream 2.0kb downstream 7115 true Chr15: 18264140-18271254 Glycine max
Glyma.15G183500 2.0kb downstream 2.0kb downstream 2000 false Chr15: 18264140-18266139 Glycine max
Glyma.15G183500 5.0kb upstream 5.0kb upstream 10115 true Chr15: 18266140-18276254 Glycine max
Glyma.15G183500 5.0kb upstream 5.0kb upstream 5000 false Chr15: 18271255-18276254 Glycine max
Glyma.15G183500 5.0kb downstream 5.0kb downstream 10115 true Chr15: 18261140-18271254 Glycine max
Glyma.15G183500 5.0kb downstream 5.0kb downstream 5000 false Chr15: 18261140-18266139 Glycine max
Glyma.15G183500 10.0kb upstream 10.0kb upstream 15115 true Chr15: 18266140-18281254 Glycine max
Glyma.15G183500 10.0kb upstream 10.0kb upstream 10000 false Chr15: 18271255-18281254 Glycine max
Glyma.15G183500 10.0kb downstream 10.0kb downstream 15115 true Chr15: 18256140-18271254 Glycine max
Glyma.15G183500 10.0kb downstream 10.0kb downstream 10000 false Chr15: 18256140-18266139 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301300 5265 Fabidae View MSA
124065046 5270 Rosid View MSA
123736440 5271 Pentapetalae View MSA
122793822 5272 Eudicot View MSA
122042265 5273 Angiosperm View MSA
121346906 5274 Embryophyte View MSA
123424651 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.69196 0.0 16.6578    
cufflinks 6.33281 0.0 27.1925   High
cufflinks 3.21313 0.0 15.4121    
cufflinks 3.00065 0.0 12.2044    
cufflinks 3.90456 0.0 16.9748    
cufflinks 4.10928 0.0 17.6406    
cufflinks 3.81125 0.0 16.9591    
cufflinks 3.03676 0.0 14.4781    
cufflinks 3.24222 0.0 15.3278    
cufflinks 0.41        
cufflinks 0.132       Low
cufflinks 0.448        
cufflinks 0.432        
cufflinks 0.384        
cufflinks 0.508        
cufflinks 0.381        
cufflinks 0.358        
cufflinks 0.52        
cufflinks 0.91       High
cufflinks 0.409        
cufflinks 0.181       Low
cufflinks 0.411        
cufflinks 0.453        
cufflinks 0.159       Low
cufflinks 0.408        
cufflinks 0.287        

0 Strain