Gene : Glyma.15G188400 G. max Wm82.a2.v1
Defline:  (1 of 1) PTHR35326:SF2 - PROTEIN PSBN Genomic Order:  1884
Name:  ? Glyma.15G188400 Secondary Identifier:  ? PAC:30495901
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.15G188400 0.5kb upstream 0.5kb upstream 873 true Chr15: 19670130-19671002 Glycine max
Glyma.15G188400 0.5kb upstream 0.5kb upstream 500 false Chr15: 19670130-19670629 Glycine max
Glyma.15G188400 0.5kb downstream 0.5kb downstream 873 true Chr15: 19670630-19671502 Glycine max
Glyma.15G188400 0.5kb downstream 0.5kb downstream 500 false Chr15: 19671003-19671502 Glycine max
Glyma.15G188400 1.0kb upstream 1.0kb upstream 1373 true Chr15: 19669630-19671002 Glycine max
Glyma.15G188400 1.0kb upstream 1.0kb upstream 1000 false Chr15: 19669630-19670629 Glycine max
Glyma.15G188400 1.0kb downstream 1.0kb downstream 1373 true Chr15: 19670630-19672002 Glycine max
Glyma.15G188400 1.0kb downstream 1.0kb downstream 1000 false Chr15: 19671003-19672002 Glycine max
Glyma.15G188400 2.0kb upstream 2.0kb upstream 2373 true Chr15: 19668630-19671002 Glycine max
Glyma.15G188400 2.0kb upstream 2.0kb upstream 2000 false Chr15: 19668630-19670629 Glycine max
Glyma.15G188400 2.0kb downstream 2.0kb downstream 2373 true Chr15: 19670630-19673002 Glycine max
Glyma.15G188400 2.0kb downstream 2.0kb downstream 2000 false Chr15: 19671003-19673002 Glycine max
Glyma.15G188400 5.0kb upstream 5.0kb upstream 5373 true Chr15: 19665630-19671002 Glycine max
Glyma.15G188400 5.0kb upstream 5.0kb upstream 5000 false Chr15: 19665630-19670629 Glycine max
Glyma.15G188400 5.0kb downstream 5.0kb downstream 5373 true Chr15: 19670630-19676002 Glycine max
Glyma.15G188400 5.0kb downstream 5.0kb downstream 5000 false Chr15: 19671003-19676002 Glycine max
Glyma.15G188400 10.0kb upstream 10.0kb upstream 10373 true Chr15: 19660630-19671002 Glycine max
Glyma.15G188400 10.0kb upstream 10.0kb upstream 10000 false Chr15: 19660630-19670629 Glycine max
Glyma.15G188400 10.0kb downstream 10.0kb downstream 10373 true Chr15: 19670630-19681002 Glycine max
Glyma.15G188400 10.0kb downstream 10.0kb downstream 10000 false Chr15: 19671003-19681002 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028384 5273 Angiosperm View MSA
122249719 5265 Fabidae Singleton cluster - no MSA
124070041 5270 Rosid View MSA
123742252 5271 Pentapetalae View MSA
122796996 5272 Eudicot View MSA
121350730 5274 Embryophyte View MSA
123381861 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.58288 0.0 32.3529    
cufflinks 1.39226 0.0 18.6481    
cufflinks 0.921857 0.0 13.8478    
cufflinks 30.2565 0.0 132.003 High High
cufflinks 0.482056 0.0 10.1941    
cufflinks 0.538265 0.0 10.8699    
cufflinks 8.56814 0.0 54.7374   High
cufflinks 0.558225 0.0 12.1337    
cufflinks 1.3933 0.0 19.2341    
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.22       High
cufflinks 0.046     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.128        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.099        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.046     Low Low
cufflinks 0.176        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.111        
cufflinks 0.0     Not Expressed Not Expressed

0 Strain