Gene : Glyma.15G275000 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR13301//PTHR13301:SF61 - X-BOX TRANSCRIPTION FACTOR-RELATED Genomic Order:  2750
Name:  ? Glyma.15G275000 Secondary Identifier:  ? PAC:30496557
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-1001 Glycine max pathologic  

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.15G275000 0.5kb upstream 0.5kb upstream 9509 true Chr15: 51338547-51348055 Glycine max
Glyma.15G275000 0.5kb upstream 0.5kb upstream 500 false Chr15: 51347556-51348055 Glycine max
Glyma.15G275000 0.5kb downstream 0.5kb downstream 9509 true Chr15: 51338047-51347555 Glycine max
Glyma.15G275000 0.5kb downstream 0.5kb downstream 500 false Chr15: 51338047-51338546 Glycine max
Glyma.15G275000 1.0kb upstream 1.0kb upstream 10009 true Chr15: 51338547-51348555 Glycine max
Glyma.15G275000 1.0kb upstream 1.0kb upstream 1000 false Chr15: 51347556-51348555 Glycine max
Glyma.15G275000 1.0kb downstream 1.0kb downstream 10009 true Chr15: 51337547-51347555 Glycine max
Glyma.15G275000 1.0kb downstream 1.0kb downstream 1000 false Chr15: 51337547-51338546 Glycine max
Glyma.15G275000 2.0kb upstream 2.0kb upstream 11009 true Chr15: 51338547-51349555 Glycine max
Glyma.15G275000 2.0kb upstream 2.0kb upstream 2000 false Chr15: 51347556-51349555 Glycine max
Glyma.15G275000 2.0kb downstream 2.0kb downstream 11009 true Chr15: 51336547-51347555 Glycine max
Glyma.15G275000 2.0kb downstream 2.0kb downstream 2000 false Chr15: 51336547-51338546 Glycine max
Glyma.15G275000 5.0kb upstream 5.0kb upstream 14009 true Chr15: 51338547-51352555 Glycine max
Glyma.15G275000 5.0kb upstream 5.0kb upstream 5000 false Chr15: 51347556-51352555 Glycine max
Glyma.15G275000 5.0kb downstream 5.0kb downstream 14009 true Chr15: 51333547-51347555 Glycine max
Glyma.15G275000 5.0kb downstream 5.0kb downstream 5000 false Chr15: 51333547-51338546 Glycine max
Glyma.15G275000 10.0kb upstream 10.0kb upstream 19009 true Chr15: 51338547-51357555 Glycine max
Glyma.15G275000 10.0kb upstream 10.0kb upstream 10000 false Chr15: 51347556-51357555 Glycine max
Glyma.15G275000 10.0kb downstream 10.0kb downstream 19009 true Chr15: 51328547-51347555 Glycine max
Glyma.15G275000 10.0kb downstream 10.0kb downstream 10000 false Chr15: 51328547-51338546 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314851 5265 Fabidae View MSA
124068602 5270 Rosid View MSA
123746424 5271 Pentapetalae View MSA
122793475 5272 Eudicot View MSA
122046929 5273 Angiosperm View MSA
121351501 5274 Embryophyte View MSA
123382193 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.69423 0.0 15.2316   Low
cufflinks 25.4493 0.0 74.2096 High  
cufflinks 14.2798 0.0 39.2043    
cufflinks 40.2635 0.0 126.556 High  
cufflinks 69.9323 0.0 246.32 High  
cufflinks 78.2231 0.0 284.508 High High
cufflinks 14.4349 0.0 39.5193    
cufflinks 55.4098 0.0 185.977 High  
cufflinks 49.3505 0.0 161.358 High  
cufflinks 45.477     High High
cufflinks 5.368        
cufflinks 13.117     High  
cufflinks 55.755     High High
cufflinks 44.604     High High
cufflinks 2.174       Low
cufflinks 9.944     High  
cufflinks 17.297     High  
cufflinks 20.674     High  
cufflinks 18.012     High  
cufflinks 6.067        
cufflinks 9.015     High  
cufflinks 8.148     High  
cufflinks 9.036     High  
cufflinks 5.177        
cufflinks 6.314        
cufflinks 15.484     High  

0 Strain