Gene : Glyma.15G275600 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR34940:SF1 - PHOTOSYSTEM II 5 KDA PROTEIN, CHLOROPLASTIC Genomic Order:  2756
Name:  ? Glyma.15G275600 Secondary Identifier:  ? PAC:30498511
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.15G275600 0.5kb upstream 0.5kb upstream 1523 true Chr15: 51455541-51457063 Glycine max
Glyma.15G275600 0.5kb upstream 0.5kb upstream 500 false Chr15: 51455541-51456040 Glycine max
Glyma.15G275600 0.5kb downstream 0.5kb downstream 1523 true Chr15: 51456041-51457563 Glycine max
Glyma.15G275600 0.5kb downstream 0.5kb downstream 500 false Chr15: 51457064-51457563 Glycine max
Glyma.15G275600 1.0kb upstream 1.0kb upstream 2023 true Chr15: 51455041-51457063 Glycine max
Glyma.15G275600 1.0kb upstream 1.0kb upstream 1000 false Chr15: 51455041-51456040 Glycine max
Glyma.15G275600 1.0kb downstream 1.0kb downstream 2023 true Chr15: 51456041-51458063 Glycine max
Glyma.15G275600 1.0kb downstream 1.0kb downstream 1000 false Chr15: 51457064-51458063 Glycine max
Glyma.15G275600 2.0kb upstream 2.0kb upstream 3023 true Chr15: 51454041-51457063 Glycine max
Glyma.15G275600 2.0kb upstream 2.0kb upstream 2000 false Chr15: 51454041-51456040 Glycine max
Glyma.15G275600 2.0kb downstream 2.0kb downstream 3023 true Chr15: 51456041-51459063 Glycine max
Glyma.15G275600 2.0kb downstream 2.0kb downstream 2000 false Chr15: 51457064-51459063 Glycine max
Glyma.15G275600 5.0kb upstream 5.0kb upstream 6023 true Chr15: 51451041-51457063 Glycine max
Glyma.15G275600 5.0kb upstream 5.0kb upstream 5000 false Chr15: 51451041-51456040 Glycine max
Glyma.15G275600 5.0kb downstream 5.0kb downstream 6023 true Chr15: 51456041-51462063 Glycine max
Glyma.15G275600 5.0kb downstream 5.0kb downstream 5000 false Chr15: 51457064-51462063 Glycine max
Glyma.15G275600 10.0kb upstream 10.0kb upstream 11023 true Chr15: 51446041-51457063 Glycine max
Glyma.15G275600 10.0kb upstream 10.0kb upstream 10000 false Chr15: 51446041-51456040 Glycine max
Glyma.15G275600 10.0kb downstream 10.0kb downstream 11023 true Chr15: 51456041-51467063 Glycine max
Glyma.15G275600 10.0kb downstream 10.0kb downstream 10000 false Chr15: 51457064-51467063 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305386 5265 Fabidae View MSA
124063108 5270 Rosid View MSA
123738637 5271 Pentapetalae View MSA
122793683 5272 Eudicot View MSA
122046745 5273 Angiosperm View MSA
121349271 5274 Embryophyte View MSA
123427633 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 201.173 0.0 617.273 High  
cufflinks 231.745 0.0 729.91 High High
cufflinks 71.2492 0.0 193.678 High  
cufflinks 117.637 0.0 334.822 High  
cufflinks 12.3597 0.0 35.2766   Low
cufflinks 22.2721 0.0 60.4326    
cufflinks 169.654 0.0 508.094 High  
cufflinks 77.9357 0.0 213.107 High  
cufflinks 5.90812 0.0 18.6314   Low
cufflinks 100.117     High  
cufflinks 0.129       Low
cufflinks 75.113     High  
cufflinks 0.285        
cufflinks 0.155        
cufflinks 0.623        
cufflinks 470.965     High High
cufflinks 0.076       Low
cufflinks 81.511     High  
cufflinks 130.249     High  
cufflinks 600.429     High High
cufflinks 0.086       Low
cufflinks 541.729     High High
cufflinks 345.671     High  
cufflinks 0.203        
cufflinks 627.184     High High
cufflinks 0.054     Low Low

0 Strain