Gene : Glyma.15G249800 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR34777:SF1 - VQ MOTIF-CONTAINING PROTEIN Genomic Order:  2498
Name:  ? Glyma.15G249800 Secondary Identifier:  ? PAC:30496563
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.15G249800 0.5kb upstream 0.5kb upstream 1116 true Chr15: 47637825-47638940 Glycine max
Glyma.15G249800 0.5kb upstream 0.5kb upstream 500 false Chr15: 47638441-47638940 Glycine max
Glyma.15G249800 0.5kb downstream 0.5kb downstream 1116 true Chr15: 47637325-47638440 Glycine max
Glyma.15G249800 0.5kb downstream 0.5kb downstream 500 false Chr15: 47637325-47637824 Glycine max
Glyma.15G249800 1.0kb upstream 1.0kb upstream 1616 true Chr15: 47637825-47639440 Glycine max
Glyma.15G249800 1.0kb upstream 1.0kb upstream 1000 false Chr15: 47638441-47639440 Glycine max
Glyma.15G249800 1.0kb downstream 1.0kb downstream 1616 true Chr15: 47636825-47638440 Glycine max
Glyma.15G249800 1.0kb downstream 1.0kb downstream 1000 false Chr15: 47636825-47637824 Glycine max
Glyma.15G249800 2.0kb upstream 2.0kb upstream 2616 true Chr15: 47637825-47640440 Glycine max
Glyma.15G249800 2.0kb upstream 2.0kb upstream 2000 false Chr15: 47638441-47640440 Glycine max
Glyma.15G249800 2.0kb downstream 2.0kb downstream 2616 true Chr15: 47635825-47638440 Glycine max
Glyma.15G249800 2.0kb downstream 2.0kb downstream 2000 false Chr15: 47635825-47637824 Glycine max
Glyma.15G249800 5.0kb upstream 5.0kb upstream 5616 true Chr15: 47637825-47643440 Glycine max
Glyma.15G249800 5.0kb upstream 5.0kb upstream 5000 false Chr15: 47638441-47643440 Glycine max
Glyma.15G249800 5.0kb downstream 5.0kb downstream 5616 true Chr15: 47632825-47638440 Glycine max
Glyma.15G249800 5.0kb downstream 5.0kb downstream 5000 false Chr15: 47632825-47637824 Glycine max
Glyma.15G249800 10.0kb upstream 10.0kb upstream 10616 true Chr15: 47637825-47648440 Glycine max
Glyma.15G249800 10.0kb upstream 10.0kb upstream 10000 false Chr15: 47638441-47648440 Glycine max
Glyma.15G249800 10.0kb downstream 10.0kb downstream 10616 true Chr15: 47627825-47638440 Glycine max
Glyma.15G249800 10.0kb downstream 10.0kb downstream 10000 false Chr15: 47627825-47637824 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026461 5273 Angiosperm View MSA
122297597 5265 Fabidae View MSA
124050155 5270 Rosid View MSA
123744131 5271 Pentapetalae View MSA
122770912 5272 Eudicot View MSA
121296343 5274 Embryophyte View MSA
123334522 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.13694 0.0 7.84548    
cufflinks 0.941015 0.0 3.59058    
cufflinks 0.551621 0.0 2.15291    
cufflinks 0.0988737 0.0 0.418609 Low Low
cufflinks 1.57684 0.0 5.87347    
cufflinks 6.51436 0.0 21.846   High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.492272 0.0 1.92845    
cufflinks 2.05024 0.0 7.53675    
cufflinks 0.641        
cufflinks 18.86     High High
cufflinks 0.703        
cufflinks 3.499        
cufflinks 1.548        
cufflinks 2.852        
cufflinks 1.259        
cufflinks 2.259        
cufflinks 0.243       Low
cufflinks 1.477        
cufflinks 0.983        
cufflinks 22.452     High High
cufflinks 1.118        
cufflinks 1.457        
cufflinks 41.518     High High
cufflinks 1.047        
cufflinks 25.78     High High

0 Strain