Gene : Glyma.16G022100 G. max Wm82.a2.v1
Defline:  (1 of 330) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  221
Name:  ? Glyma.16G022100 Secondary Identifier:  ? PAC:30560461
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G022100 0.5kb upstream 0.5kb upstream 2734 true Chr16: 2085183-2087916 Glycine max
Glyma.16G022100 0.5kb upstream 0.5kb upstream 500 false Chr16: 2085183-2085682 Glycine max
Glyma.16G022100 0.5kb downstream 0.5kb downstream 2734 true Chr16: 2085683-2088416 Glycine max
Glyma.16G022100 0.5kb downstream 0.5kb downstream 500 false Chr16: 2087917-2088416 Glycine max
Glyma.16G022100 1.0kb upstream 1.0kb upstream 3234 true Chr16: 2084683-2087916 Glycine max
Glyma.16G022100 1.0kb upstream 1.0kb upstream 1000 false Chr16: 2084683-2085682 Glycine max
Glyma.16G022100 1.0kb downstream 1.0kb downstream 3234 true Chr16: 2085683-2088916 Glycine max
Glyma.16G022100 1.0kb downstream 1.0kb downstream 1000 false Chr16: 2087917-2088916 Glycine max
Glyma.16G022100 2.0kb upstream 2.0kb upstream 4234 true Chr16: 2083683-2087916 Glycine max
Glyma.16G022100 2.0kb upstream 2.0kb upstream 2000 false Chr16: 2083683-2085682 Glycine max
Glyma.16G022100 2.0kb downstream 2.0kb downstream 4234 true Chr16: 2085683-2089916 Glycine max
Glyma.16G022100 2.0kb downstream 2.0kb downstream 2000 false Chr16: 2087917-2089916 Glycine max
Glyma.16G022100 5.0kb upstream 5.0kb upstream 7234 true Chr16: 2080683-2087916 Glycine max
Glyma.16G022100 5.0kb upstream 5.0kb upstream 5000 false Chr16: 2080683-2085682 Glycine max
Glyma.16G022100 5.0kb downstream 5.0kb downstream 7234 true Chr16: 2085683-2092916 Glycine max
Glyma.16G022100 5.0kb downstream 5.0kb downstream 5000 false Chr16: 2087917-2092916 Glycine max
Glyma.16G022100 10.0kb upstream 10.0kb upstream 12234 true Chr16: 2075683-2087916 Glycine max
Glyma.16G022100 10.0kb upstream 10.0kb upstream 10000 false Chr16: 2075683-2085682 Glycine max
Glyma.16G022100 10.0kb downstream 10.0kb downstream 12234 true Chr16: 2085683-2097916 Glycine max
Glyma.16G022100 10.0kb downstream 10.0kb downstream 10000 false Chr16: 2087917-2097916 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122297206 5265 Fabidae View MSA
124072342 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.400457 0.0 3.18276    
cufflinks 0.41204 0.0 2.75232    
cufflinks 0.204479 0.0 3.52997 Low Low
cufflinks 0.987956 0.0 5.23486   High
cufflinks 0.399214 0.0 4.34921    
cufflinks 0.444189 0.0 17.7873    
cufflinks 0.426446 0.0 2.24014    
cufflinks 0.276597 0.0 3.31772    
cufflinks 0.554746 0.0 5.08888    
cufflinks 0.274        
cufflinks 0.069       Low
cufflinks 0.603        
cufflinks 0.885       High
cufflinks 1.37       High
cufflinks 0.043     Low Low
cufflinks 0.401        
cufflinks 0.485        
cufflinks 0.458        
cufflinks 0.582        
cufflinks 0.147        
cufflinks 0.122        
cufflinks 0.209        
cufflinks 0.335        
cufflinks 0.161        
cufflinks 0.337        
cufflinks 0.191        

0 Strain