Gene : Glyma.16G024600 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR12601:SF17 - TETRATRICOPEPTIDE REPEAT-CONTAINING PROTEIN Genomic Order:  246
Name:  ? Glyma.16G024600 Secondary Identifier:  ? PAC:30561305
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G024600 0.5kb upstream 0.5kb upstream 17556 true Chr16: 2374161-2391716 Glycine max
Glyma.16G024600 0.5kb upstream 0.5kb upstream 500 false Chr16: 2391217-2391716 Glycine max
Glyma.16G024600 0.5kb downstream 0.5kb downstream 17556 true Chr16: 2373661-2391216 Glycine max
Glyma.16G024600 0.5kb downstream 0.5kb downstream 500 false Chr16: 2373661-2374160 Glycine max
Glyma.16G024600 1.0kb upstream 1.0kb upstream 18056 true Chr16: 2374161-2392216 Glycine max
Glyma.16G024600 1.0kb upstream 1.0kb upstream 1000 false Chr16: 2391217-2392216 Glycine max
Glyma.16G024600 1.0kb downstream 1.0kb downstream 18056 true Chr16: 2373161-2391216 Glycine max
Glyma.16G024600 1.0kb downstream 1.0kb downstream 1000 false Chr16: 2373161-2374160 Glycine max
Glyma.16G024600 2.0kb upstream 2.0kb upstream 19056 true Chr16: 2374161-2393216 Glycine max
Glyma.16G024600 2.0kb upstream 2.0kb upstream 2000 false Chr16: 2391217-2393216 Glycine max
Glyma.16G024600 2.0kb downstream 2.0kb downstream 19056 true Chr16: 2372161-2391216 Glycine max
Glyma.16G024600 2.0kb downstream 2.0kb downstream 2000 false Chr16: 2372161-2374160 Glycine max
Glyma.16G024600 5.0kb upstream 5.0kb upstream 22056 true Chr16: 2374161-2396216 Glycine max
Glyma.16G024600 5.0kb upstream 5.0kb upstream 5000 false Chr16: 2391217-2396216 Glycine max
Glyma.16G024600 5.0kb downstream 5.0kb downstream 22056 true Chr16: 2369161-2391216 Glycine max
Glyma.16G024600 5.0kb downstream 5.0kb downstream 5000 false Chr16: 2369161-2374160 Glycine max
Glyma.16G024600 10.0kb upstream 10.0kb upstream 27056 true Chr16: 2374161-2401216 Glycine max
Glyma.16G024600 10.0kb upstream 10.0kb upstream 10000 false Chr16: 2391217-2401216 Glycine max
Glyma.16G024600 10.0kb downstream 10.0kb downstream 27056 true Chr16: 2364161-2391216 Glycine max
Glyma.16G024600 10.0kb downstream 10.0kb downstream 10000 false Chr16: 2364161-2374160 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305072 5265 Fabidae View MSA
124073724 5270 Rosid View MSA
123753708 5271 Pentapetalae View MSA
122789807 5272 Eudicot View MSA
122044017 5273 Angiosperm View MSA
121347327 5274 Embryophyte View MSA
123427490 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 23.5498 0.0 125.85 High High
cufflinks 9.58665 0.0 38.9505    
cufflinks 22.5219 0.0 141.892 High High
cufflinks 3.05251 0.0 11.8297    
cufflinks 1.7952 0.0 7.67087    
cufflinks 0.705221 0.0 3.00246   Low
cufflinks 3.44871 0.0 13.3251    
cufflinks 2.38176 0.0 9.49399    
cufflinks 0.618772 0.0 2.11739   Low
cufflinks 0.251        
cufflinks 0.016     Low Low
cufflinks 1.006        
cufflinks 0.032     Low  
cufflinks 0.038     Low  
cufflinks 0.031     Low  
cufflinks 1.802       High
cufflinks 0.02     Low Low
cufflinks 0.484        
cufflinks 0.921        
cufflinks 2.773       High
cufflinks 0.016     Low Low
cufflinks 2.366       High
cufflinks 1.629       High
cufflinks 0.027     Low  
cufflinks 2.175       High
cufflinks 0.065     Low  

0 Strain