Gene : Glyma.16G017700 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11969:SF29 - TRANSCRIPTION FACTOR BHLH57-RELATED Genomic Order:  177
Name:  ? Glyma.16G017700 Secondary Identifier:  ? PAC:30560651
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G017700 0.5kb upstream 0.5kb upstream 3893 true Chr16: 1576687-1580579 Glycine max
Glyma.16G017700 0.5kb upstream 0.5kb upstream 500 false Chr16: 1580080-1580579 Glycine max
Glyma.16G017700 0.5kb downstream 0.5kb downstream 3893 true Chr16: 1576187-1580079 Glycine max
Glyma.16G017700 0.5kb downstream 0.5kb downstream 500 false Chr16: 1576187-1576686 Glycine max
Glyma.16G017700 1.0kb upstream 1.0kb upstream 4393 true Chr16: 1576687-1581079 Glycine max
Glyma.16G017700 1.0kb upstream 1.0kb upstream 1000 false Chr16: 1580080-1581079 Glycine max
Glyma.16G017700 1.0kb downstream 1.0kb downstream 4393 true Chr16: 1575687-1580079 Glycine max
Glyma.16G017700 1.0kb downstream 1.0kb downstream 1000 false Chr16: 1575687-1576686 Glycine max
Glyma.16G017700 2.0kb upstream 2.0kb upstream 5393 true Chr16: 1576687-1582079 Glycine max
Glyma.16G017700 2.0kb upstream 2.0kb upstream 2000 false Chr16: 1580080-1582079 Glycine max
Glyma.16G017700 2.0kb downstream 2.0kb downstream 5393 true Chr16: 1574687-1580079 Glycine max
Glyma.16G017700 2.0kb downstream 2.0kb downstream 2000 false Chr16: 1574687-1576686 Glycine max
Glyma.16G017700 5.0kb upstream 5.0kb upstream 8393 true Chr16: 1576687-1585079 Glycine max
Glyma.16G017700 5.0kb upstream 5.0kb upstream 5000 false Chr16: 1580080-1585079 Glycine max
Glyma.16G017700 5.0kb downstream 5.0kb downstream 8393 true Chr16: 1571687-1580079 Glycine max
Glyma.16G017700 5.0kb downstream 5.0kb downstream 5000 false Chr16: 1571687-1576686 Glycine max
Glyma.16G017700 10.0kb upstream 10.0kb upstream 13393 true Chr16: 1576687-1590079 Glycine max
Glyma.16G017700 10.0kb upstream 10.0kb upstream 10000 false Chr16: 1580080-1590079 Glycine max
Glyma.16G017700 10.0kb downstream 10.0kb downstream 13393 true Chr16: 1566687-1580079 Glycine max
Glyma.16G017700 10.0kb downstream 10.0kb downstream 10000 false Chr16: 1566687-1576686 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122247145 5265 Fabidae Singleton cluster - no MSA
124067472 5270 Rosid View MSA
123749285 5271 Pentapetalae View MSA
122794835 5272 Eudicot View MSA
122051154 5273 Angiosperm View MSA
121350598 5274 Embryophyte View MSA
123428440 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.46832 0.0 7.56669    
cufflinks 10.6555 0.0 37.1713   High
cufflinks 1.55593 0.0 7.4643    
cufflinks 5.98488 0.0 19.3362    
cufflinks 0.257112 0.0 1.26965   Low
cufflinks 0.575764 0.0 3.4219    
cufflinks 13.4391 0.0 47.0481   High
cufflinks 0.600562 0.0 3.54305    
cufflinks 0.500595 0.0 2.99404    
cufflinks 0.227        
cufflinks 0.003     Low Low
cufflinks 1.993        
cufflinks 0.063     Low  
cufflinks 0.055     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 13.519     High High
cufflinks 0.063     Low  
cufflinks 1.572        
cufflinks 4.089        
cufflinks 17.52     High High
cufflinks 0.01     Low Low
cufflinks 18.496     High High
cufflinks 14.874     High High
cufflinks 0.003     Low Low
cufflinks 15.998     High High
cufflinks 0.01     Low Low

0 Strain