Gene : Glyma.16G018300 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR11516:SF25 - PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT ALPHA-3, CHLOROPLASTIC Genomic Order:  183
Name:  ? Glyma.16G018300 Secondary Identifier:  ? PAC:30560967
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Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-5173 Glycine max pathologic  
Gmax PWY-5464 Glycine max pathologic  
Gmax PYRUVDEHYD-PWY Glycine max pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G018300 0.5kb upstream 0.5kb upstream 4909 true Chr16: 1619151-1624059 Glycine max
Glyma.16G018300 0.5kb upstream 0.5kb upstream 500 false Chr16: 1623560-1624059 Glycine max
Glyma.16G018300 0.5kb downstream 0.5kb downstream 4909 true Chr16: 1618651-1623559 Glycine max
Glyma.16G018300 0.5kb downstream 0.5kb downstream 500 false Chr16: 1618651-1619150 Glycine max
Glyma.16G018300 1.0kb upstream 1.0kb upstream 5409 true Chr16: 1619151-1624559 Glycine max
Glyma.16G018300 1.0kb upstream 1.0kb upstream 1000 false Chr16: 1623560-1624559 Glycine max
Glyma.16G018300 1.0kb downstream 1.0kb downstream 5409 true Chr16: 1618151-1623559 Glycine max
Glyma.16G018300 1.0kb downstream 1.0kb downstream 1000 false Chr16: 1618151-1619150 Glycine max
Glyma.16G018300 2.0kb upstream 2.0kb upstream 6409 true Chr16: 1619151-1625559 Glycine max
Glyma.16G018300 2.0kb upstream 2.0kb upstream 2000 false Chr16: 1623560-1625559 Glycine max
Glyma.16G018300 2.0kb downstream 2.0kb downstream 6409 true Chr16: 1617151-1623559 Glycine max
Glyma.16G018300 2.0kb downstream 2.0kb downstream 2000 false Chr16: 1617151-1619150 Glycine max
Glyma.16G018300 5.0kb upstream 5.0kb upstream 9409 true Chr16: 1619151-1628559 Glycine max
Glyma.16G018300 5.0kb upstream 5.0kb upstream 5000 false Chr16: 1623560-1628559 Glycine max
Glyma.16G018300 5.0kb downstream 5.0kb downstream 9409 true Chr16: 1614151-1623559 Glycine max
Glyma.16G018300 5.0kb downstream 5.0kb downstream 5000 false Chr16: 1614151-1619150 Glycine max
Glyma.16G018300 10.0kb upstream 10.0kb upstream 14409 true Chr16: 1619151-1633559 Glycine max
Glyma.16G018300 10.0kb upstream 10.0kb upstream 10000 false Chr16: 1623560-1633559 Glycine max
Glyma.16G018300 10.0kb downstream 10.0kb downstream 14409 true Chr16: 1609151-1623559 Glycine max
Glyma.16G018300 10.0kb downstream 10.0kb downstream 10000 false Chr16: 1609151-1619150 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309169 5265 Fabidae View MSA
124066481 5270 Rosid View MSA
123745685 5271 Pentapetalae View MSA
122791580 5272 Eudicot View MSA
122044804 5273 Angiosperm View MSA
121347425 5274 Embryophyte View MSA
123423942 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 23.9061 0.0 64.6925 High  
cufflinks 26.7428 0.0 72.8915 High  
cufflinks 7.08461 0.0 19.339   Low
cufflinks 22.7299 0.0 61.369 High  
cufflinks 26.9723 0.0 73.5007 High  
cufflinks 17.7633 0.0 47.5178    
cufflinks 59.7921 0.0 178.479 High High
cufflinks 16.0358 0.0 42.8203    
cufflinks 15.0667 0.0 40.2043    
cufflinks 11.802     High  
cufflinks 0.831       Low
cufflinks 8.69     High  
cufflinks 19.818     High  
cufflinks 28.567     High  
cufflinks 1.392       Low
cufflinks 34.837     High  
cufflinks 5.749        
cufflinks 20.785     High  
cufflinks 24.511     High  
cufflinks 36.412     High  
cufflinks 1.973       Low
cufflinks 31.87     High  
cufflinks 28.928     High  
cufflinks 1.182       Low
cufflinks 38.101     High High
cufflinks 3.848        

0 Strain