Gene : Glyma.16G005700 G. max Wm82.a2.v1
Defline:  (1 of 2) PF06741//PF14438 - LsmAD domain (LsmAD) // Ataxin 2 SM domain (SM-ATX) Genomic Order:  57
Name:  ? Glyma.16G005700 Secondary Identifier:  ? PAC:30559635
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G005700 0.5kb upstream 0.5kb upstream 10861 true Chr16: 417716-428576 Glycine max
Glyma.16G005700 0.5kb upstream 0.5kb upstream 500 false Chr16: 428077-428576 Glycine max
Glyma.16G005700 0.5kb downstream 0.5kb downstream 10861 true Chr16: 417216-428076 Glycine max
Glyma.16G005700 0.5kb downstream 0.5kb downstream 500 false Chr16: 417216-417715 Glycine max
Glyma.16G005700 1.0kb upstream 1.0kb upstream 11361 true Chr16: 417716-429076 Glycine max
Glyma.16G005700 1.0kb upstream 1.0kb upstream 1000 false Chr16: 428077-429076 Glycine max
Glyma.16G005700 1.0kb downstream 1.0kb downstream 11361 true Chr16: 416716-428076 Glycine max
Glyma.16G005700 1.0kb downstream 1.0kb downstream 1000 false Chr16: 416716-417715 Glycine max
Glyma.16G005700 2.0kb upstream 2.0kb upstream 12361 true Chr16: 417716-430076 Glycine max
Glyma.16G005700 2.0kb upstream 2.0kb upstream 2000 false Chr16: 428077-430076 Glycine max
Glyma.16G005700 2.0kb downstream 2.0kb downstream 12361 true Chr16: 415716-428076 Glycine max
Glyma.16G005700 2.0kb downstream 2.0kb downstream 2000 false Chr16: 415716-417715 Glycine max
Glyma.16G005700 5.0kb upstream 5.0kb upstream 15361 true Chr16: 417716-433076 Glycine max
Glyma.16G005700 5.0kb upstream 5.0kb upstream 5000 false Chr16: 428077-433076 Glycine max
Glyma.16G005700 5.0kb downstream 5.0kb downstream 15361 true Chr16: 412716-428076 Glycine max
Glyma.16G005700 5.0kb downstream 5.0kb downstream 5000 false Chr16: 412716-417715 Glycine max
Glyma.16G005700 10.0kb upstream 10.0kb upstream 20361 true Chr16: 417716-438076 Glycine max
Glyma.16G005700 10.0kb upstream 10.0kb upstream 10000 false Chr16: 428077-438076 Glycine max
Glyma.16G005700 10.0kb downstream 10.0kb downstream 20361 true Chr16: 407716-428076 Glycine max
Glyma.16G005700 10.0kb downstream 10.0kb downstream 10000 false Chr16: 407716-417715 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310988 5265 Fabidae View MSA
124063578 5270 Rosid View MSA
123743281 5271 Pentapetalae View MSA
122790252 5272 Eudicot View MSA
122049882 5273 Angiosperm View MSA
121348132 5274 Embryophyte View MSA
123427801 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.96287 0.0 43.6477    
cufflinks 9.05244 0.0 48.4721    
cufflinks 15.9236 0.0 72.0833   High
cufflinks 9.29392 0.0 42.3989    
cufflinks 8.21905 0.0 40.6605   Low
cufflinks 13.7811 0.0 52.7299   High
cufflinks 9.17858 0.0 42.2739    
cufflinks 11.3952 0.0 54.9506    
cufflinks 10.6328 0.0 51.9717    
cufflinks 0.364        
cufflinks 0.432       High
cufflinks 0.407        
cufflinks 0.36        
cufflinks 0.303       Low
cufflinks 0.42        
cufflinks 0.339        
cufflinks 0.3       Low
cufflinks 0.409        
cufflinks 0.435       High
cufflinks 0.384        
cufflinks 0.346        
cufflinks 0.391        
cufflinks 0.305       Low
cufflinks 0.429       High
cufflinks 0.393        
cufflinks 0.357        

0 Strain