Gene : Glyma.16G011100 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR31008:SF3 - COP1-INTERACTING PROTEIN-RELATED PROTEIN-RELATED Genomic Order:  111
Name:  ? Glyma.16G011100 Secondary Identifier:  ? PAC:30559289
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G011100 0.5kb upstream 0.5kb upstream 9258 true Chr16: 960861-970118 Glycine max
Glyma.16G011100 0.5kb upstream 0.5kb upstream 500 false Chr16: 969619-970118 Glycine max
Glyma.16G011100 0.5kb downstream 0.5kb downstream 9258 true Chr16: 960361-969618 Glycine max
Glyma.16G011100 0.5kb downstream 0.5kb downstream 500 false Chr16: 960361-960860 Glycine max
Glyma.16G011100 1.0kb upstream 1.0kb upstream 9758 true Chr16: 960861-970618 Glycine max
Glyma.16G011100 1.0kb upstream 1.0kb upstream 1000 false Chr16: 969619-970618 Glycine max
Glyma.16G011100 1.0kb downstream 1.0kb downstream 9758 true Chr16: 959861-969618 Glycine max
Glyma.16G011100 1.0kb downstream 1.0kb downstream 1000 false Chr16: 959861-960860 Glycine max
Glyma.16G011100 2.0kb upstream 2.0kb upstream 10758 true Chr16: 960861-971618 Glycine max
Glyma.16G011100 2.0kb upstream 2.0kb upstream 2000 false Chr16: 969619-971618 Glycine max
Glyma.16G011100 2.0kb downstream 2.0kb downstream 10758 true Chr16: 958861-969618 Glycine max
Glyma.16G011100 2.0kb downstream 2.0kb downstream 2000 false Chr16: 958861-960860 Glycine max
Glyma.16G011100 5.0kb upstream 5.0kb upstream 13758 true Chr16: 960861-974618 Glycine max
Glyma.16G011100 5.0kb upstream 5.0kb upstream 5000 false Chr16: 969619-974618 Glycine max
Glyma.16G011100 5.0kb downstream 5.0kb downstream 13758 true Chr16: 955861-969618 Glycine max
Glyma.16G011100 5.0kb downstream 5.0kb downstream 5000 false Chr16: 955861-960860 Glycine max
Glyma.16G011100 10.0kb upstream 10.0kb upstream 18758 true Chr16: 960861-979618 Glycine max
Glyma.16G011100 10.0kb upstream 10.0kb upstream 10000 false Chr16: 969619-979618 Glycine max
Glyma.16G011100 10.0kb downstream 10.0kb downstream 18758 true Chr16: 950861-969618 Glycine max
Glyma.16G011100 10.0kb downstream 10.0kb downstream 10000 false Chr16: 950861-960860 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311279 5265 Fabidae View MSA
124070250 5270 Rosid View MSA
123751203 5271 Pentapetalae View MSA
122797098 5272 Eudicot View MSA
122048758 5273 Angiosperm View MSA
121350762 5274 Embryophyte View MSA
123381879 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.62057 0.0 21.5786    
cufflinks 7.92239 0.0 30.6636    
cufflinks 5.25427 0.0 20.0082    
cufflinks 10.3883 0.0 41.5708    
cufflinks 7.49808 0.0 28.9242    
cufflinks 4.50505 0.0 17.6604   Low
cufflinks 14.4769 0.0 61.4618   High
cufflinks 8.35057 0.0 32.5443    
cufflinks 6.09364 0.0 23.2391    
cufflinks 1.54        
cufflinks 0.3       Low
cufflinks 1.35        
cufflinks 1.336        
cufflinks 1.604        
cufflinks 0.248       Low
cufflinks 1.23        
cufflinks 0.392       Low
cufflinks 1.957       High
cufflinks 1.941       High
cufflinks 1.013        
cufflinks 0.484        
cufflinks 1.044        
cufflinks 1.232        
cufflinks 0.445        
cufflinks 1.003        
cufflinks 0.47        

0 Strain