Gene : Glyma.16G048700 G. max Wm82.a2.v1
Defline:  (1 of 2) KOG2164 - Predicted E3 ubiquitin ligase Genomic Order:  487
Name:  ? Glyma.16G048700 Secondary Identifier:  ? PAC:30559368
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G048700 0.5kb upstream 0.5kb upstream 8205 true Chr16: 4676504-4684708 Glycine max
Glyma.16G048700 0.5kb upstream 0.5kb upstream 500 false Chr16: 4676504-4677003 Glycine max
Glyma.16G048700 0.5kb downstream 0.5kb downstream 8205 true Chr16: 4677004-4685208 Glycine max
Glyma.16G048700 0.5kb downstream 0.5kb downstream 500 false Chr16: 4684709-4685208 Glycine max
Glyma.16G048700 1.0kb upstream 1.0kb upstream 8705 true Chr16: 4676004-4684708 Glycine max
Glyma.16G048700 1.0kb upstream 1.0kb upstream 1000 false Chr16: 4676004-4677003 Glycine max
Glyma.16G048700 1.0kb downstream 1.0kb downstream 8705 true Chr16: 4677004-4685708 Glycine max
Glyma.16G048700 1.0kb downstream 1.0kb downstream 1000 false Chr16: 4684709-4685708 Glycine max
Glyma.16G048700 2.0kb upstream 2.0kb upstream 9705 true Chr16: 4675004-4684708 Glycine max
Glyma.16G048700 2.0kb upstream 2.0kb upstream 2000 false Chr16: 4675004-4677003 Glycine max
Glyma.16G048700 2.0kb downstream 2.0kb downstream 9705 true Chr16: 4677004-4686708 Glycine max
Glyma.16G048700 2.0kb downstream 2.0kb downstream 2000 false Chr16: 4684709-4686708 Glycine max
Glyma.16G048700 5.0kb upstream 5.0kb upstream 12705 true Chr16: 4672004-4684708 Glycine max
Glyma.16G048700 5.0kb upstream 5.0kb upstream 5000 false Chr16: 4672004-4677003 Glycine max
Glyma.16G048700 5.0kb downstream 5.0kb downstream 12705 true Chr16: 4677004-4689708 Glycine max
Glyma.16G048700 5.0kb downstream 5.0kb downstream 5000 false Chr16: 4684709-4689708 Glycine max
Glyma.16G048700 10.0kb upstream 10.0kb upstream 17705 true Chr16: 4667004-4684708 Glycine max
Glyma.16G048700 10.0kb upstream 10.0kb upstream 10000 false Chr16: 4667004-4677003 Glycine max
Glyma.16G048700 10.0kb downstream 10.0kb downstream 17705 true Chr16: 4677004-4694708 Glycine max
Glyma.16G048700 10.0kb downstream 10.0kb downstream 10000 false Chr16: 4684709-4694708 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306700 5265 Fabidae View MSA
124060786 5270 Rosid View MSA
123742061 5271 Pentapetalae View MSA
122793495 5272 Eudicot View MSA
122042542 5273 Angiosperm View MSA
121344560 5274 Embryophyte View MSA
123423758 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 28.6627 0.0 139.001 High High
cufflinks 19.4649 0.0 59.2797    
cufflinks 28.9192 0.0 141.549 High High
cufflinks 26.2684 0.0 125.401 High  
cufflinks 16.5119 0.0 72.835   Low
cufflinks 16.1901 0.0 66.918   Low
cufflinks 27.5473 0.0 118.41 High  
cufflinks 22.0959 0.0 78.5506 High  
cufflinks 22.1319 0.0 100.848 High  
cufflinks 2.606        
cufflinks 3.499       High
cufflinks 3.406        
cufflinks 2.343        
cufflinks 1.78       Low
cufflinks 3.106        
cufflinks 2.463        
cufflinks 3.54       High
cufflinks 3.542       High
cufflinks 2.613        
cufflinks 2.655        
cufflinks 2.749        
cufflinks 2.888        
cufflinks 2.547        
cufflinks 3.75       High
cufflinks 2.455        
cufflinks 2.792        

0 Strain