Gene : Glyma.16G052900 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR13169//PTHR13169:SF1 - UBIQUITIN-LIKE PROTEIN 3 HCG-1 PROTEIN Genomic Order:  529
Name:  ? Glyma.16G052900 Secondary Identifier:  ? PAC:30560186
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G052900 0.5kb upstream 0.5kb upstream 4956 true Chr16: 5113454-5118409 Glycine max
Glyma.16G052900 0.5kb upstream 0.5kb upstream 500 false Chr16: 5113454-5113953 Glycine max
Glyma.16G052900 0.5kb downstream 0.5kb downstream 4956 true Chr16: 5113954-5118909 Glycine max
Glyma.16G052900 0.5kb downstream 0.5kb downstream 500 false Chr16: 5118410-5118909 Glycine max
Glyma.16G052900 1.0kb upstream 1.0kb upstream 5456 true Chr16: 5112954-5118409 Glycine max
Glyma.16G052900 1.0kb upstream 1.0kb upstream 1000 false Chr16: 5112954-5113953 Glycine max
Glyma.16G052900 1.0kb downstream 1.0kb downstream 5456 true Chr16: 5113954-5119409 Glycine max
Glyma.16G052900 1.0kb downstream 1.0kb downstream 1000 false Chr16: 5118410-5119409 Glycine max
Glyma.16G052900 2.0kb upstream 2.0kb upstream 6456 true Chr16: 5111954-5118409 Glycine max
Glyma.16G052900 2.0kb upstream 2.0kb upstream 2000 false Chr16: 5111954-5113953 Glycine max
Glyma.16G052900 2.0kb downstream 2.0kb downstream 6456 true Chr16: 5113954-5120409 Glycine max
Glyma.16G052900 2.0kb downstream 2.0kb downstream 2000 false Chr16: 5118410-5120409 Glycine max
Glyma.16G052900 5.0kb upstream 5.0kb upstream 9456 true Chr16: 5108954-5118409 Glycine max
Glyma.16G052900 5.0kb upstream 5.0kb upstream 5000 false Chr16: 5108954-5113953 Glycine max
Glyma.16G052900 5.0kb downstream 5.0kb downstream 9456 true Chr16: 5113954-5123409 Glycine max
Glyma.16G052900 5.0kb downstream 5.0kb downstream 5000 false Chr16: 5118410-5123409 Glycine max
Glyma.16G052900 10.0kb upstream 10.0kb upstream 14456 true Chr16: 5103954-5118409 Glycine max
Glyma.16G052900 10.0kb upstream 10.0kb upstream 10000 false Chr16: 5103954-5113953 Glycine max
Glyma.16G052900 10.0kb downstream 10.0kb downstream 14456 true Chr16: 5113954-5128409 Glycine max
Glyma.16G052900 10.0kb downstream 10.0kb downstream 10000 false Chr16: 5118410-5128409 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304960 5265 Fabidae View MSA
124067947 5270 Rosid View MSA
123739636 5271 Pentapetalae View MSA
122787599 5272 Eudicot View MSA
122050739 5273 Angiosperm View MSA
121344338 5274 Embryophyte View MSA
123427741 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.4592 0.0 60.5531 High  
cufflinks 14.6708 0.0 40.6716    
cufflinks 18.5148 0.0 50.4008    
cufflinks 21.8135 0.0 58.8755 High  
cufflinks 12.8984 0.0 36.1976   Low
cufflinks 13.3223 0.0 37.2638    
cufflinks 30.5704 0.0 81.6675 High High
cufflinks 19.3265 0.0 52.4849    
cufflinks 12.8156 0.0 35.9151   Low
cufflinks 2.16        
cufflinks 4.385       High
cufflinks 3.381        
cufflinks 1.593       Low
cufflinks 1.366       Low
cufflinks 2.903        
cufflinks 3.439        
cufflinks 1.206       Low
cufflinks 2.637        
cufflinks 2.662        
cufflinks 3.754        
cufflinks 4.364       High
cufflinks 4.148        
cufflinks 3.27        
cufflinks 4.155        
cufflinks 3.96        
cufflinks 1.75       Low

0 Strain