Gene : Glyma.16G056600 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR10857//PTHR10857:SF43 - COPINE Genomic Order:  566
Name:  ? Glyma.16G056600 Secondary Identifier:  ? PAC:30562280
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G056600 0.5kb upstream 0.5kb upstream 3726 true Chr16: 5551173-5554898 Glycine max
Glyma.16G056600 0.5kb upstream 0.5kb upstream 500 false Chr16: 5551173-5551672 Glycine max
Glyma.16G056600 0.5kb downstream 0.5kb downstream 3726 true Chr16: 5551673-5555398 Glycine max
Glyma.16G056600 0.5kb downstream 0.5kb downstream 500 false Chr16: 5554899-5555398 Glycine max
Glyma.16G056600 1.0kb upstream 1.0kb upstream 4226 true Chr16: 5550673-5554898 Glycine max
Glyma.16G056600 1.0kb upstream 1.0kb upstream 1000 false Chr16: 5550673-5551672 Glycine max
Glyma.16G056600 1.0kb downstream 1.0kb downstream 4226 true Chr16: 5551673-5555898 Glycine max
Glyma.16G056600 1.0kb downstream 1.0kb downstream 1000 false Chr16: 5554899-5555898 Glycine max
Glyma.16G056600 2.0kb upstream 2.0kb upstream 5226 true Chr16: 5549673-5554898 Glycine max
Glyma.16G056600 2.0kb upstream 2.0kb upstream 2000 false Chr16: 5549673-5551672 Glycine max
Glyma.16G056600 2.0kb downstream 2.0kb downstream 5226 true Chr16: 5551673-5556898 Glycine max
Glyma.16G056600 2.0kb downstream 2.0kb downstream 2000 false Chr16: 5554899-5556898 Glycine max
Glyma.16G056600 5.0kb upstream 5.0kb upstream 8226 true Chr16: 5546673-5554898 Glycine max
Glyma.16G056600 5.0kb upstream 5.0kb upstream 5000 false Chr16: 5546673-5551672 Glycine max
Glyma.16G056600 5.0kb downstream 5.0kb downstream 8226 true Chr16: 5551673-5559898 Glycine max
Glyma.16G056600 5.0kb downstream 5.0kb downstream 5000 false Chr16: 5554899-5559898 Glycine max
Glyma.16G056600 10.0kb upstream 10.0kb upstream 13226 true Chr16: 5541673-5554898 Glycine max
Glyma.16G056600 10.0kb upstream 10.0kb upstream 10000 false Chr16: 5541673-5551672 Glycine max
Glyma.16G056600 10.0kb downstream 10.0kb downstream 13226 true Chr16: 5551673-5564898 Glycine max
Glyma.16G056600 10.0kb downstream 10.0kb downstream 10000 false Chr16: 5554899-5564898 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306148 5265 Fabidae View MSA
124062843 5270 Rosid View MSA
123750755 5271 Pentapetalae View MSA
122796494 5272 Eudicot View MSA
122041662 5273 Angiosperm View MSA
121346693 5274 Embryophyte View MSA
123380427 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 79.2213 0.0 232.19 High Low
cufflinks 114.544 0.0 355.845 High  
cufflinks 99.0304 0.0 301.167 High  
cufflinks 235.745 0.0 863.495 High High
cufflinks 126.679 0.0 401.408 High  
cufflinks 159.986 0.0 530.741 High  
cufflinks 278.0 0.0 1062.1 High High
cufflinks 118.992 0.0 373.562 High  
cufflinks 153.173 0.0 503.693 High  
cufflinks 46.945     High  
cufflinks 27.185     High Low
cufflinks 54.753     High High
cufflinks 50.427     High  
cufflinks 50.285     High  
cufflinks 22.011     High Low
cufflinks 36.522     High  
cufflinks 30.812     High  
cufflinks 58.988     High High
cufflinks 46.732     High  
cufflinks 47.567     High  
cufflinks 33.823     High  
cufflinks 39.599     High  
cufflinks 26.534     High Low
cufflinks 34.848     High  
cufflinks 41.002     High  
cufflinks 30.953     High  

0 Strain