Gene : Glyma.16G043100 G. max Wm82.a2.v1
Defline:  (1 of 3) PF14200 - Ricin-type beta-trefoil lectin domain-like (RicinB_lectin_2) Genomic Order:  431
Name:  ? Glyma.16G043100 Secondary Identifier:  ? PAC:30562271
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G043100 0.5kb upstream 0.5kb upstream 3551 true Chr16: 4028980-4032530 Glycine max
Glyma.16G043100 0.5kb upstream 0.5kb upstream 500 false Chr16: 4032031-4032530 Glycine max
Glyma.16G043100 0.5kb downstream 0.5kb downstream 3551 true Chr16: 4028480-4032030 Glycine max
Glyma.16G043100 0.5kb downstream 0.5kb downstream 500 false Chr16: 4028480-4028979 Glycine max
Glyma.16G043100 1.0kb upstream 1.0kb upstream 4051 true Chr16: 4028980-4033030 Glycine max
Glyma.16G043100 1.0kb upstream 1.0kb upstream 1000 false Chr16: 4032031-4033030 Glycine max
Glyma.16G043100 1.0kb downstream 1.0kb downstream 4051 true Chr16: 4027980-4032030 Glycine max
Glyma.16G043100 1.0kb downstream 1.0kb downstream 1000 false Chr16: 4027980-4028979 Glycine max
Glyma.16G043100 2.0kb upstream 2.0kb upstream 5051 true Chr16: 4028980-4034030 Glycine max
Glyma.16G043100 2.0kb upstream 2.0kb upstream 2000 false Chr16: 4032031-4034030 Glycine max
Glyma.16G043100 2.0kb downstream 2.0kb downstream 5051 true Chr16: 4026980-4032030 Glycine max
Glyma.16G043100 2.0kb downstream 2.0kb downstream 2000 false Chr16: 4026980-4028979 Glycine max
Glyma.16G043100 5.0kb upstream 5.0kb upstream 8051 true Chr16: 4028980-4037030 Glycine max
Glyma.16G043100 5.0kb upstream 5.0kb upstream 5000 false Chr16: 4032031-4037030 Glycine max
Glyma.16G043100 5.0kb downstream 5.0kb downstream 8051 true Chr16: 4023980-4032030 Glycine max
Glyma.16G043100 5.0kb downstream 5.0kb downstream 5000 false Chr16: 4023980-4028979 Glycine max
Glyma.16G043100 10.0kb upstream 10.0kb upstream 13051 true Chr16: 4028980-4042030 Glycine max
Glyma.16G043100 10.0kb upstream 10.0kb upstream 10000 false Chr16: 4032031-4042030 Glycine max
Glyma.16G043100 10.0kb downstream 10.0kb downstream 13051 true Chr16: 4018980-4032030 Glycine max
Glyma.16G043100 10.0kb downstream 10.0kb downstream 10000 false Chr16: 4018980-4028979 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122250031 5265 Fabidae Singleton cluster - no MSA
124065427 5270 Rosid View MSA
123738777 5271 Pentapetalae View MSA
122787706 5272 Eudicot View MSA
122049376 5273 Angiosperm View MSA
121349071 5274 Embryophyte View MSA
123381151 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.0329 0.0 7.05392   Low
cufflinks 37.5581 0.0 100.487 High  
cufflinks 12.4169 0.0 34.4517    
cufflinks 89.5163 0.0 255.709 High High
cufflinks 44.5046 0.0 119.949 High  
cufflinks 7.9359 0.0 23.0457    
cufflinks 44.9936 0.0 121.319 High  
cufflinks 92.2194 0.0 264.983 High High
cufflinks 20.3325 0.0 54.5961 High  
cufflinks 41.579     High High
cufflinks 0.568       Low
cufflinks 7.132        
cufflinks 5.38        
cufflinks 6.006        
cufflinks 0.932       Low
cufflinks 3.691        
cufflinks 4.052        
cufflinks 12.91     High High
cufflinks 15.57     High High
cufflinks 1.92        
cufflinks 1.364        
cufflinks 2.58        
cufflinks 4.416        
cufflinks 0.532       Low
cufflinks 2.445        
cufflinks 1.764        

0 Strain