Gene : Glyma.16G047900 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR13445:SF3 - PROTEIN TSSC4 Genomic Order:  479
Name:  ? Glyma.16G047900 Secondary Identifier:  ? PAC:30560320
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G047900 0.5kb upstream 0.5kb upstream 2816 true Chr16: 4556771-4559586 Glycine max
Glyma.16G047900 0.5kb upstream 0.5kb upstream 500 false Chr16: 4556771-4557270 Glycine max
Glyma.16G047900 0.5kb downstream 0.5kb downstream 2816 true Chr16: 4557271-4560086 Glycine max
Glyma.16G047900 0.5kb downstream 0.5kb downstream 500 false Chr16: 4559587-4560086 Glycine max
Glyma.16G047900 1.0kb upstream 1.0kb upstream 3316 true Chr16: 4556271-4559586 Glycine max
Glyma.16G047900 1.0kb upstream 1.0kb upstream 1000 false Chr16: 4556271-4557270 Glycine max
Glyma.16G047900 1.0kb downstream 1.0kb downstream 3316 true Chr16: 4557271-4560586 Glycine max
Glyma.16G047900 1.0kb downstream 1.0kb downstream 1000 false Chr16: 4559587-4560586 Glycine max
Glyma.16G047900 2.0kb upstream 2.0kb upstream 4316 true Chr16: 4555271-4559586 Glycine max
Glyma.16G047900 2.0kb upstream 2.0kb upstream 2000 false Chr16: 4555271-4557270 Glycine max
Glyma.16G047900 2.0kb downstream 2.0kb downstream 4316 true Chr16: 4557271-4561586 Glycine max
Glyma.16G047900 2.0kb downstream 2.0kb downstream 2000 false Chr16: 4559587-4561586 Glycine max
Glyma.16G047900 5.0kb upstream 5.0kb upstream 7316 true Chr16: 4552271-4559586 Glycine max
Glyma.16G047900 5.0kb upstream 5.0kb upstream 5000 false Chr16: 4552271-4557270 Glycine max
Glyma.16G047900 5.0kb downstream 5.0kb downstream 7316 true Chr16: 4557271-4564586 Glycine max
Glyma.16G047900 5.0kb downstream 5.0kb downstream 5000 false Chr16: 4559587-4564586 Glycine max
Glyma.16G047900 10.0kb upstream 10.0kb upstream 12316 true Chr16: 4547271-4559586 Glycine max
Glyma.16G047900 10.0kb upstream 10.0kb upstream 10000 false Chr16: 4547271-4557270 Glycine max
Glyma.16G047900 10.0kb downstream 10.0kb downstream 12316 true Chr16: 4557271-4569586 Glycine max
Glyma.16G047900 10.0kb downstream 10.0kb downstream 10000 false Chr16: 4559587-4569586 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041303 5273 Angiosperm View MSA
122302071 5265 Fabidae View MSA
124068037 5270 Rosid View MSA
123741101 5271 Pentapetalae View MSA
122794619 5272 Eudicot View MSA
121348542 5274 Embryophyte View MSA
123426495 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.32384 0.0 25.2908    
cufflinks 8.6717 0.0 23.642    
cufflinks 10.3237 0.0 27.8613    
cufflinks 8.25852 0.0 22.5793    
cufflinks 9.61953 0.0 26.047    
cufflinks 10.5433 0.0 28.4226    
cufflinks 11.7612 0.0 31.5939   High
cufflinks 8.12823 0.0 22.2274   Low
cufflinks 8.00973 0.0 21.9467   Low
cufflinks 4.119       Low
cufflinks 9.743     High High
cufflinks 6.707        
cufflinks 6.402        
cufflinks 6.317        
cufflinks 9.963     High High
cufflinks 6.251        
cufflinks 6.453     High  
cufflinks 5.199       Low
cufflinks 6.276        
cufflinks 5.974        
cufflinks 9.153     High High
cufflinks 6.143        
cufflinks 5.739        
cufflinks 9.964     High High
cufflinks 5.491        
cufflinks 7.573     High  

0 Strain