Gene : Glyma.16G036900 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR33284:SF1 - RIBOSOMAL L25/TL5/CTC N-TERMINAL 5S RRNA BINDING DOMAIN-CONTAINING PROTEIN Genomic Order:  369
Name:  ? Glyma.16G036900 Secondary Identifier:  ? PAC:30562030
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G036900 0.5kb upstream 0.5kb upstream 3534 true Chr16: 3507857-3511390 Glycine max
Glyma.16G036900 0.5kb upstream 0.5kb upstream 500 false Chr16: 3510891-3511390 Glycine max
Glyma.16G036900 0.5kb downstream 0.5kb downstream 3534 true Chr16: 3507357-3510890 Glycine max
Glyma.16G036900 0.5kb downstream 0.5kb downstream 500 false Chr16: 3507357-3507856 Glycine max
Glyma.16G036900 1.0kb upstream 1.0kb upstream 4034 true Chr16: 3507857-3511890 Glycine max
Glyma.16G036900 1.0kb upstream 1.0kb upstream 1000 false Chr16: 3510891-3511890 Glycine max
Glyma.16G036900 1.0kb downstream 1.0kb downstream 4034 true Chr16: 3506857-3510890 Glycine max
Glyma.16G036900 1.0kb downstream 1.0kb downstream 1000 false Chr16: 3506857-3507856 Glycine max
Glyma.16G036900 2.0kb upstream 2.0kb upstream 5034 true Chr16: 3507857-3512890 Glycine max
Glyma.16G036900 2.0kb upstream 2.0kb upstream 2000 false Chr16: 3510891-3512890 Glycine max
Glyma.16G036900 2.0kb downstream 2.0kb downstream 5034 true Chr16: 3505857-3510890 Glycine max
Glyma.16G036900 2.0kb downstream 2.0kb downstream 2000 false Chr16: 3505857-3507856 Glycine max
Glyma.16G036900 5.0kb upstream 5.0kb upstream 8034 true Chr16: 3507857-3515890 Glycine max
Glyma.16G036900 5.0kb upstream 5.0kb upstream 5000 false Chr16: 3510891-3515890 Glycine max
Glyma.16G036900 5.0kb downstream 5.0kb downstream 8034 true Chr16: 3502857-3510890 Glycine max
Glyma.16G036900 5.0kb downstream 5.0kb downstream 5000 false Chr16: 3502857-3507856 Glycine max
Glyma.16G036900 10.0kb upstream 10.0kb upstream 13034 true Chr16: 3507857-3520890 Glycine max
Glyma.16G036900 10.0kb upstream 10.0kb upstream 10000 false Chr16: 3510891-3520890 Glycine max
Glyma.16G036900 10.0kb downstream 10.0kb downstream 13034 true Chr16: 3497857-3510890 Glycine max
Glyma.16G036900 10.0kb downstream 10.0kb downstream 10000 false Chr16: 3497857-3507856 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122249984 5265 Fabidae Singleton cluster - no MSA
123993324 5270 Rosid Singleton cluster - no MSA
123743591 5271 Pentapetalae View MSA
122793831 5272 Eudicot View MSA
122044337 5273 Angiosperm View MSA
121344036 5274 Embryophyte View MSA
123426023 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.36237 0.0 15.0414    
cufflinks 4.44663 0.0 15.376    
cufflinks 2.16194 0.0 7.93495   Low
cufflinks 4.6807 0.0 16.0776    
cufflinks 8.01238 0.0 25.1451   High
cufflinks 3.46989 0.0 12.1993    
cufflinks 8.50643 0.0 26.7359   High
cufflinks 4.59582 0.0 15.7445    
cufflinks 6.44435 0.0 21.1036    
cufflinks 0.672        
cufflinks 0.154       Low
cufflinks 0.46        
cufflinks 1.176       High
cufflinks 1.524       High
cufflinks 0.453        
cufflinks 0.678        
cufflinks 0.221       Low
cufflinks 0.703        
cufflinks 0.745        
cufflinks 0.726        
cufflinks 0.258       Low
cufflinks 0.524        
cufflinks 0.849        
cufflinks 0.147       Low
cufflinks 0.47        
cufflinks 0.454        

0 Strain