Gene : Glyma.16G027500 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR22536 - LUNG CANCER METASTASIS-RELATED LCMR1 PROTEIN Genomic Order:  275
Name:  ? Glyma.16G027500 Secondary Identifier:  ? PAC:30559187
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G027500 0.5kb upstream 0.5kb upstream 6274 true Chr16: 2689265-2695538 Glycine max
Glyma.16G027500 0.5kb upstream 0.5kb upstream 500 false Chr16: 2695039-2695538 Glycine max
Glyma.16G027500 0.5kb downstream 0.5kb downstream 6274 true Chr16: 2688765-2695038 Glycine max
Glyma.16G027500 0.5kb downstream 0.5kb downstream 500 false Chr16: 2688765-2689264 Glycine max
Glyma.16G027500 1.0kb upstream 1.0kb upstream 6774 true Chr16: 2689265-2696038 Glycine max
Glyma.16G027500 1.0kb upstream 1.0kb upstream 1000 false Chr16: 2695039-2696038 Glycine max
Glyma.16G027500 1.0kb downstream 1.0kb downstream 6774 true Chr16: 2688265-2695038 Glycine max
Glyma.16G027500 1.0kb downstream 1.0kb downstream 1000 false Chr16: 2688265-2689264 Glycine max
Glyma.16G027500 2.0kb upstream 2.0kb upstream 7774 true Chr16: 2689265-2697038 Glycine max
Glyma.16G027500 2.0kb upstream 2.0kb upstream 2000 false Chr16: 2695039-2697038 Glycine max
Glyma.16G027500 2.0kb downstream 2.0kb downstream 7774 true Chr16: 2687265-2695038 Glycine max
Glyma.16G027500 2.0kb downstream 2.0kb downstream 2000 false Chr16: 2687265-2689264 Glycine max
Glyma.16G027500 5.0kb upstream 5.0kb upstream 10774 true Chr16: 2689265-2700038 Glycine max
Glyma.16G027500 5.0kb upstream 5.0kb upstream 5000 false Chr16: 2695039-2700038 Glycine max
Glyma.16G027500 5.0kb downstream 5.0kb downstream 10774 true Chr16: 2684265-2695038 Glycine max
Glyma.16G027500 5.0kb downstream 5.0kb downstream 5000 false Chr16: 2684265-2689264 Glycine max
Glyma.16G027500 10.0kb upstream 10.0kb upstream 15774 true Chr16: 2689265-2705038 Glycine max
Glyma.16G027500 10.0kb upstream 10.0kb upstream 10000 false Chr16: 2695039-2705038 Glycine max
Glyma.16G027500 10.0kb downstream 10.0kb downstream 15774 true Chr16: 2679265-2695038 Glycine max
Glyma.16G027500 10.0kb downstream 10.0kb downstream 10000 false Chr16: 2679265-2689264 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312705 5265 Fabidae View MSA
124074053 5270 Rosid View MSA
123743720 5271 Pentapetalae View MSA
122789289 5272 Eudicot View MSA
122041858 5273 Angiosperm View MSA
121345817 5274 Embryophyte View MSA
123425736 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.11788 0.0 21.1097    
cufflinks 4.20648 0.0 15.7261    
cufflinks 4.28145 0.0 15.877    
cufflinks 4.05988 0.0 15.2937    
cufflinks 3.68574 0.0 14.4298    
cufflinks 6.08043 0.0 20.5778   High
cufflinks 3.55591 0.0 14.2696   Low
cufflinks 3.7573 0.0 14.5189    
cufflinks 5.18458 0.0 18.2606    
cufflinks 0.62       Low
cufflinks 1.764       High
cufflinks 0.987        
cufflinks 1.041        
cufflinks 1.003        
cufflinks 1.583       High
cufflinks 1.228        
cufflinks 0.772       Low
cufflinks 0.886        
cufflinks 0.804       Low
cufflinks 1.268        
cufflinks 1.676       High
cufflinks 1.37        
cufflinks 1.229        
cufflinks 1.821       High
cufflinks 1.24        
cufflinks 1.264        

0 Strain