Gene : Glyma.16G027600 G. max Wm82.a2.v1
Defline:  (1 of 2) PF08167 - rRNA processing/ribosome biogenesis (RIX1) Genomic Order:  276
Name:  ? Glyma.16G027600 Secondary Identifier:  ? PAC:30560413
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G027600 0.5kb upstream 0.5kb upstream 9717 true Chr16: 2696912-2706628 Glycine max
Glyma.16G027600 0.5kb upstream 0.5kb upstream 500 false Chr16: 2696912-2697411 Glycine max
Glyma.16G027600 0.5kb downstream 0.5kb downstream 9717 true Chr16: 2697412-2707128 Glycine max
Glyma.16G027600 0.5kb downstream 0.5kb downstream 500 false Chr16: 2706629-2707128 Glycine max
Glyma.16G027600 1.0kb upstream 1.0kb upstream 10217 true Chr16: 2696412-2706628 Glycine max
Glyma.16G027600 1.0kb upstream 1.0kb upstream 1000 false Chr16: 2696412-2697411 Glycine max
Glyma.16G027600 1.0kb downstream 1.0kb downstream 10217 true Chr16: 2697412-2707628 Glycine max
Glyma.16G027600 1.0kb downstream 1.0kb downstream 1000 false Chr16: 2706629-2707628 Glycine max
Glyma.16G027600 2.0kb upstream 2.0kb upstream 11217 true Chr16: 2695412-2706628 Glycine max
Glyma.16G027600 2.0kb upstream 2.0kb upstream 2000 false Chr16: 2695412-2697411 Glycine max
Glyma.16G027600 2.0kb downstream 2.0kb downstream 11217 true Chr16: 2697412-2708628 Glycine max
Glyma.16G027600 2.0kb downstream 2.0kb downstream 2000 false Chr16: 2706629-2708628 Glycine max
Glyma.16G027600 5.0kb upstream 5.0kb upstream 14217 true Chr16: 2692412-2706628 Glycine max
Glyma.16G027600 5.0kb upstream 5.0kb upstream 5000 false Chr16: 2692412-2697411 Glycine max
Glyma.16G027600 5.0kb downstream 5.0kb downstream 14217 true Chr16: 2697412-2711628 Glycine max
Glyma.16G027600 5.0kb downstream 5.0kb downstream 5000 false Chr16: 2706629-2711628 Glycine max
Glyma.16G027600 10.0kb upstream 10.0kb upstream 19217 true Chr16: 2687412-2706628 Glycine max
Glyma.16G027600 10.0kb upstream 10.0kb upstream 10000 false Chr16: 2687412-2697411 Glycine max
Glyma.16G027600 10.0kb downstream 10.0kb downstream 19217 true Chr16: 2697412-2716628 Glycine max
Glyma.16G027600 10.0kb downstream 10.0kb downstream 10000 false Chr16: 2706629-2716628 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305656 5265 Fabidae View MSA
124050381 5270 Rosid View MSA
123750218 5271 Pentapetalae View MSA
122787219 5272 Eudicot View MSA
122050850 5273 Angiosperm View MSA
121349026 5274 Embryophyte View MSA
123425273 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.89434 0.0 8.41464    
cufflinks 4.6073 0.0 12.7322    
cufflinks 1.51146 0.0 4.79069   Low
cufflinks 3.9776 0.0 11.1327    
cufflinks 4.5904 0.0 12.6969    
cufflinks 2.01544 0.0 6.14361   Low
cufflinks 4.36089 0.0 12.1234    
cufflinks 3.90463 0.0 10.9431    
cufflinks 3.31267 0.0 9.462    
cufflinks 0.919        
cufflinks 0.14       Low
cufflinks 0.961        
cufflinks 1.611       High
cufflinks 2.082       High
cufflinks 0.433        
cufflinks 0.916        
cufflinks 0.625        
cufflinks 1.058        
cufflinks 1.85       High
cufflinks 0.965        
cufflinks 0.207       Low
cufflinks 0.97        
cufflinks 1.368        
cufflinks 0.185       Low
cufflinks 0.94        
cufflinks 0.392        

0 Strain