Gene : Glyma.16G027700 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR23416:SF2 - SERINE ACETYLTRANSFERASE 5 Genomic Order:  277
Name:  ? Glyma.16G027700 Secondary Identifier:  ? PAC:30562014
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax CYSTSYN-PWY Glycine max pathologic  
Gmax PWY-6936 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G027700 0.5kb upstream 0.5kb upstream 2284 true Chr16: 2708921-2711204 Glycine max
Glyma.16G027700 0.5kb upstream 0.5kb upstream 500 false Chr16: 2708921-2709420 Glycine max
Glyma.16G027700 0.5kb downstream 0.5kb downstream 2284 true Chr16: 2709421-2711704 Glycine max
Glyma.16G027700 0.5kb downstream 0.5kb downstream 500 false Chr16: 2711205-2711704 Glycine max
Glyma.16G027700 1.0kb upstream 1.0kb upstream 2784 true Chr16: 2708421-2711204 Glycine max
Glyma.16G027700 1.0kb upstream 1.0kb upstream 1000 false Chr16: 2708421-2709420 Glycine max
Glyma.16G027700 1.0kb downstream 1.0kb downstream 2784 true Chr16: 2709421-2712204 Glycine max
Glyma.16G027700 1.0kb downstream 1.0kb downstream 1000 false Chr16: 2711205-2712204 Glycine max
Glyma.16G027700 2.0kb upstream 2.0kb upstream 3784 true Chr16: 2707421-2711204 Glycine max
Glyma.16G027700 2.0kb upstream 2.0kb upstream 2000 false Chr16: 2707421-2709420 Glycine max
Glyma.16G027700 2.0kb downstream 2.0kb downstream 3784 true Chr16: 2709421-2713204 Glycine max
Glyma.16G027700 2.0kb downstream 2.0kb downstream 2000 false Chr16: 2711205-2713204 Glycine max
Glyma.16G027700 5.0kb upstream 5.0kb upstream 6784 true Chr16: 2704421-2711204 Glycine max
Glyma.16G027700 5.0kb upstream 5.0kb upstream 5000 false Chr16: 2704421-2709420 Glycine max
Glyma.16G027700 5.0kb downstream 5.0kb downstream 6784 true Chr16: 2709421-2716204 Glycine max
Glyma.16G027700 5.0kb downstream 5.0kb downstream 5000 false Chr16: 2711205-2716204 Glycine max
Glyma.16G027700 10.0kb upstream 10.0kb upstream 11784 true Chr16: 2699421-2711204 Glycine max
Glyma.16G027700 10.0kb upstream 10.0kb upstream 10000 false Chr16: 2699421-2709420 Glycine max
Glyma.16G027700 10.0kb downstream 10.0kb downstream 11784 true Chr16: 2709421-2721204 Glycine max
Glyma.16G027700 10.0kb downstream 10.0kb downstream 10000 false Chr16: 2711205-2721204 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309116 5265 Fabidae View MSA
124068098 5270 Rosid View MSA
123738273 5271 Pentapetalae View MSA
122789751 5272 Eudicot View MSA
122047158 5273 Angiosperm View MSA
121348374 5274 Embryophyte View MSA
123426625 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 37.6628 0.0 100.967 High High
cufflinks 11.8312 0.0 32.9094    
cufflinks 10.8818 0.0 30.5661    
cufflinks 25.5565 0.0 68.2363 High High
cufflinks 14.6148 0.0 39.6952    
cufflinks 10.8243 0.0 30.1437    
cufflinks 15.7639 0.0 42.677    
cufflinks 18.6596 0.0 50.2849    
cufflinks 12.3939 0.0 34.1827    
cufflinks 4.853        
cufflinks 2.777       Low
cufflinks 5.654        
cufflinks 3.821        
cufflinks 4.482        
cufflinks 5.828     High  
cufflinks 4.762        
cufflinks 2.409       Low
cufflinks 6.622       High
cufflinks 6.884       High
cufflinks 4.62        
cufflinks 6.762     High High
cufflinks 5.065        
cufflinks 5.887        
cufflinks 4.021        
cufflinks 4.352        
cufflinks 3.369       Low

0 Strain