Gene : Glyma.16G031000 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR31852:SF6 - LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN Genomic Order:  310
Name:  ? Glyma.16G031000 Secondary Identifier:  ? PAC:30561455
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G031000 0.5kb upstream 0.5kb upstream 1714 true Chr16: 2934876-2936589 Glycine max
Glyma.16G031000 0.5kb upstream 0.5kb upstream 500 false Chr16: 2936090-2936589 Glycine max
Glyma.16G031000 0.5kb downstream 0.5kb downstream 1714 true Chr16: 2934376-2936089 Glycine max
Glyma.16G031000 0.5kb downstream 0.5kb downstream 500 false Chr16: 2934376-2934875 Glycine max
Glyma.16G031000 1.0kb upstream 1.0kb upstream 2214 true Chr16: 2934876-2937089 Glycine max
Glyma.16G031000 1.0kb upstream 1.0kb upstream 1000 false Chr16: 2936090-2937089 Glycine max
Glyma.16G031000 1.0kb downstream 1.0kb downstream 2214 true Chr16: 2933876-2936089 Glycine max
Glyma.16G031000 1.0kb downstream 1.0kb downstream 1000 false Chr16: 2933876-2934875 Glycine max
Glyma.16G031000 2.0kb upstream 2.0kb upstream 3214 true Chr16: 2934876-2938089 Glycine max
Glyma.16G031000 2.0kb upstream 2.0kb upstream 2000 false Chr16: 2936090-2938089 Glycine max
Glyma.16G031000 2.0kb downstream 2.0kb downstream 3214 true Chr16: 2932876-2936089 Glycine max
Glyma.16G031000 2.0kb downstream 2.0kb downstream 2000 false Chr16: 2932876-2934875 Glycine max
Glyma.16G031000 5.0kb upstream 5.0kb upstream 6214 true Chr16: 2934876-2941089 Glycine max
Glyma.16G031000 5.0kb upstream 5.0kb upstream 5000 false Chr16: 2936090-2941089 Glycine max
Glyma.16G031000 5.0kb downstream 5.0kb downstream 6214 true Chr16: 2929876-2936089 Glycine max
Glyma.16G031000 5.0kb downstream 5.0kb downstream 5000 false Chr16: 2929876-2934875 Glycine max
Glyma.16G031000 10.0kb upstream 10.0kb upstream 11214 true Chr16: 2934876-2946089 Glycine max
Glyma.16G031000 10.0kb upstream 10.0kb upstream 10000 false Chr16: 2936090-2946089 Glycine max
Glyma.16G031000 10.0kb downstream 10.0kb downstream 11214 true Chr16: 2924876-2936089 Glycine max
Glyma.16G031000 10.0kb downstream 10.0kb downstream 10000 false Chr16: 2924876-2934875 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301127 5265 Fabidae View MSA
124074203 5270 Rosid View MSA
123748410 5271 Pentapetalae View MSA
122786143 5272 Eudicot View MSA
122049772 5273 Angiosperm View MSA
121350992 5274 Embryophyte View MSA
123381962 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.03998 0.0 3.79144    
cufflinks 1.12888 0.0 4.09569    
cufflinks 3.29719 0.0 10.8303   High
cufflinks 0.873168 0.0 3.21323    
cufflinks 0.759054 0.0 2.81436    
cufflinks 2.54057 0.0 8.61992    
cufflinks 0.103264 0.0 0.415584 Low Low
cufflinks 1.35977 0.0 4.86546    
cufflinks 0.693998 0.0 2.58436    
cufflinks 0.424        
cufflinks 0.563        
cufflinks 0.902        
cufflinks 0.31        
cufflinks 0.1       Low
cufflinks 0.046     Low Low
cufflinks 1.062        
cufflinks 0.528        
cufflinks 0.836        
cufflinks 1.539       High
cufflinks 1.09        
cufflinks 0.45        
cufflinks 1.09        
cufflinks 1.713       High
cufflinks 1.493        
cufflinks 0.778        
cufflinks 0.237        

0 Strain