Gene : Glyma.16G083800 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR22594:SF36 - ASPARAGINE--TRNA LIGASE, CYTOPLASMIC 2 Genomic Order:  838
Name:  ? Glyma.16G083800 Secondary Identifier:  ? PAC:30560359
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax TRNA-CHARGING-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G083800 0.5kb upstream 0.5kb upstream 6009 true Chr16: 9677629-9683637 Glycine max
Glyma.16G083800 0.5kb upstream 0.5kb upstream 500 false Chr16: 9683138-9683637 Glycine max
Glyma.16G083800 0.5kb downstream 0.5kb downstream 6009 true Chr16: 9677129-9683137 Glycine max
Glyma.16G083800 0.5kb downstream 0.5kb downstream 500 false Chr16: 9677129-9677628 Glycine max
Glyma.16G083800 1.0kb upstream 1.0kb upstream 6509 true Chr16: 9677629-9684137 Glycine max
Glyma.16G083800 1.0kb upstream 1.0kb upstream 1000 false Chr16: 9683138-9684137 Glycine max
Glyma.16G083800 1.0kb downstream 1.0kb downstream 6509 true Chr16: 9676629-9683137 Glycine max
Glyma.16G083800 1.0kb downstream 1.0kb downstream 1000 false Chr16: 9676629-9677628 Glycine max
Glyma.16G083800 2.0kb upstream 2.0kb upstream 7509 true Chr16: 9677629-9685137 Glycine max
Glyma.16G083800 2.0kb upstream 2.0kb upstream 2000 false Chr16: 9683138-9685137 Glycine max
Glyma.16G083800 2.0kb downstream 2.0kb downstream 7509 true Chr16: 9675629-9683137 Glycine max
Glyma.16G083800 2.0kb downstream 2.0kb downstream 2000 false Chr16: 9675629-9677628 Glycine max
Glyma.16G083800 5.0kb upstream 5.0kb upstream 10509 true Chr16: 9677629-9688137 Glycine max
Glyma.16G083800 5.0kb upstream 5.0kb upstream 5000 false Chr16: 9683138-9688137 Glycine max
Glyma.16G083800 5.0kb downstream 5.0kb downstream 10509 true Chr16: 9672629-9683137 Glycine max
Glyma.16G083800 5.0kb downstream 5.0kb downstream 5000 false Chr16: 9672629-9677628 Glycine max
Glyma.16G083800 10.0kb upstream 10.0kb upstream 15509 true Chr16: 9677629-9693137 Glycine max
Glyma.16G083800 10.0kb upstream 10.0kb upstream 10000 false Chr16: 9683138-9693137 Glycine max
Glyma.16G083800 10.0kb downstream 10.0kb downstream 15509 true Chr16: 9667629-9683137 Glycine max
Glyma.16G083800 10.0kb downstream 10.0kb downstream 10000 false Chr16: 9667629-9677628 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307835 5265 Fabidae View MSA
124074798 5270 Rosid View MSA
123738885 5271 Pentapetalae View MSA
122790023 5272 Eudicot View MSA
122045893 5273 Angiosperm View MSA
121347200 5274 Embryophyte View MSA
123425101 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.14816 0.0 0.71831 Low  
cufflinks 0.36787 0.0 1.75087    
cufflinks 11.9672 0.0 35.5469   High
cufflinks 0.348968 0.0 2.18029    
cufflinks 0.539312 0.0 3.20114    
cufflinks 0.457908 0.0 2.09306    
cufflinks 0.0527243 0.0 0.422581 Low Low
cufflinks 0.97156 0.0 5.0755    
cufflinks 1.21832 0.0 6.01087    
cufflinks 0.456        
cufflinks 0.202        
cufflinks 2.73       High
cufflinks 0.828       High
cufflinks 0.209        
cufflinks 0.005     Low Low
cufflinks 0.097     Low  
cufflinks 0.294        
cufflinks 0.587        
cufflinks 0.051     Low  
cufflinks 0.13        
cufflinks 0.378        
cufflinks 0.171        
cufflinks 0.052     Low  
cufflinks 0.172        
cufflinks 0.116        
cufflinks 0.383        

0 Strain