Gene : Glyma.16G084000 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR31301:SF12 - LOB DOMAIN-CONTAINING PROTEIN 25 Genomic Order:  840
Name:  ? Glyma.16G084000 Secondary Identifier:  ? PAC:30560691
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G084000 0.5kb upstream 0.5kb upstream 5587 true Chr16: 9694947-9700533 Glycine max
Glyma.16G084000 0.5kb upstream 0.5kb upstream 500 false Chr16: 9694947-9695446 Glycine max
Glyma.16G084000 0.5kb downstream 0.5kb downstream 5587 true Chr16: 9695447-9701033 Glycine max
Glyma.16G084000 0.5kb downstream 0.5kb downstream 500 false Chr16: 9700534-9701033 Glycine max
Glyma.16G084000 1.0kb upstream 1.0kb upstream 6087 true Chr16: 9694447-9700533 Glycine max
Glyma.16G084000 1.0kb upstream 1.0kb upstream 1000 false Chr16: 9694447-9695446 Glycine max
Glyma.16G084000 1.0kb downstream 1.0kb downstream 6087 true Chr16: 9695447-9701533 Glycine max
Glyma.16G084000 1.0kb downstream 1.0kb downstream 1000 false Chr16: 9700534-9701533 Glycine max
Glyma.16G084000 2.0kb upstream 2.0kb upstream 7087 true Chr16: 9693447-9700533 Glycine max
Glyma.16G084000 2.0kb upstream 2.0kb upstream 2000 false Chr16: 9693447-9695446 Glycine max
Glyma.16G084000 2.0kb downstream 2.0kb downstream 7087 true Chr16: 9695447-9702533 Glycine max
Glyma.16G084000 2.0kb downstream 2.0kb downstream 2000 false Chr16: 9700534-9702533 Glycine max
Glyma.16G084000 5.0kb upstream 5.0kb upstream 10087 true Chr16: 9690447-9700533 Glycine max
Glyma.16G084000 5.0kb upstream 5.0kb upstream 5000 false Chr16: 9690447-9695446 Glycine max
Glyma.16G084000 5.0kb downstream 5.0kb downstream 10087 true Chr16: 9695447-9705533 Glycine max
Glyma.16G084000 5.0kb downstream 5.0kb downstream 5000 false Chr16: 9700534-9705533 Glycine max
Glyma.16G084000 10.0kb upstream 10.0kb upstream 15087 true Chr16: 9685447-9700533 Glycine max
Glyma.16G084000 10.0kb upstream 10.0kb upstream 10000 false Chr16: 9685447-9695446 Glycine max
Glyma.16G084000 10.0kb downstream 10.0kb downstream 15087 true Chr16: 9695447-9710533 Glycine max
Glyma.16G084000 10.0kb downstream 10.0kb downstream 10000 false Chr16: 9700534-9710533 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122247138 5265 Fabidae Singleton cluster - no MSA
124072898 5270 Rosid View MSA
123752210 5271 Pentapetalae View MSA
122796223 5272 Eudicot View MSA
122048133 5273 Angiosperm View MSA
121350574 5274 Embryophyte View MSA
123381803 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.42355 0.0 8.92977    
cufflinks 2.55474 0.0 14.0899    
cufflinks 1.91421 0.0 11.2624    
cufflinks 3.50154 0.0 18.0026    
cufflinks 2.46184 0.0 14.1664    
cufflinks 0.512069 0.0 4.14776   Low
cufflinks 2.40857 0.0 14.2315    
cufflinks 2.18032 0.0 12.7674    
cufflinks 3.10076 0.0 16.2031    
cufflinks 0.292        
cufflinks 0.36        
cufflinks 0.252        
cufflinks 0.244       Low
cufflinks 0.294        
cufflinks 0.527       High
cufflinks 0.288        
cufflinks 0.221       Low
cufflinks 0.555       High
cufflinks 0.394        
cufflinks 0.307        
cufflinks 0.574       High
cufflinks 0.337        
cufflinks 0.233       Low
cufflinks 0.441        
cufflinks 0.33        
cufflinks 0.627       High

0 Strain