Gene : Glyma.16G077700 G. max Wm82.a2.v1
Defline:  (1 of 1) KOG2441 - mRNA splicing factor/probable chromatin binding snw family nuclear protein Genomic Order:  777
Name:  ? Glyma.16G077700 Secondary Identifier:  ? PAC:30559894
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G077700 0.5kb upstream 0.5kb upstream 2677 true Chr16: 8000527-8003203 Glycine max
Glyma.16G077700 0.5kb upstream 0.5kb upstream 500 false Chr16: 8000527-8001026 Glycine max
Glyma.16G077700 0.5kb downstream 0.5kb downstream 2677 true Chr16: 8001027-8003703 Glycine max
Glyma.16G077700 0.5kb downstream 0.5kb downstream 500 false Chr16: 8003204-8003703 Glycine max
Glyma.16G077700 1.0kb upstream 1.0kb upstream 3177 true Chr16: 8000027-8003203 Glycine max
Glyma.16G077700 1.0kb upstream 1.0kb upstream 1000 false Chr16: 8000027-8001026 Glycine max
Glyma.16G077700 1.0kb downstream 1.0kb downstream 3177 true Chr16: 8001027-8004203 Glycine max
Glyma.16G077700 1.0kb downstream 1.0kb downstream 1000 false Chr16: 8003204-8004203 Glycine max
Glyma.16G077700 2.0kb upstream 2.0kb upstream 4177 true Chr16: 7999027-8003203 Glycine max
Glyma.16G077700 2.0kb upstream 2.0kb upstream 2000 false Chr16: 7999027-8001026 Glycine max
Glyma.16G077700 2.0kb downstream 2.0kb downstream 4177 true Chr16: 8001027-8005203 Glycine max
Glyma.16G077700 2.0kb downstream 2.0kb downstream 2000 false Chr16: 8003204-8005203 Glycine max
Glyma.16G077700 5.0kb upstream 5.0kb upstream 7177 true Chr16: 7996027-8003203 Glycine max
Glyma.16G077700 5.0kb upstream 5.0kb upstream 5000 false Chr16: 7996027-8001026 Glycine max
Glyma.16G077700 5.0kb downstream 5.0kb downstream 7177 true Chr16: 8001027-8008203 Glycine max
Glyma.16G077700 5.0kb downstream 5.0kb downstream 5000 false Chr16: 8003204-8008203 Glycine max
Glyma.16G077700 10.0kb upstream 10.0kb upstream 12177 true Chr16: 7991027-8003203 Glycine max
Glyma.16G077700 10.0kb upstream 10.0kb upstream 10000 false Chr16: 7991027-8001026 Glycine max
Glyma.16G077700 10.0kb downstream 10.0kb downstream 12177 true Chr16: 8001027-8013203 Glycine max
Glyma.16G077700 10.0kb downstream 10.0kb downstream 10000 false Chr16: 8003204-8013203 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122247254 5265 Fabidae Singleton cluster - no MSA
124041238 5270 Rosid View MSA
123746163 5271 Pentapetalae View MSA
122796652 5272 Eudicot View MSA
122045671 5273 Angiosperm View MSA
121346165 5274 Embryophyte View MSA
123425869 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.4808 0.0 28.0841   High
cufflinks 7.78926 0.0 21.2118    
cufflinks 9.62054 0.0 25.8807    
cufflinks 7.58075 0.0 20.6333    
cufflinks 9.22247 0.0 24.794    
cufflinks 6.25014 0.0 17.2569   Low
cufflinks 10.4506 0.0 27.9865   High
cufflinks 8.75814 0.0 23.6683    
cufflinks 8.04117 0.0 21.8069    
cufflinks 13.129     High Low
cufflinks 16.855     High  
cufflinks 13.366     High  
cufflinks 12.796     High Low
cufflinks 16.422     High  
cufflinks 14.503     High  
cufflinks 15.58     High  
cufflinks 20.34     High High
cufflinks 12.556     High Low
cufflinks 18.708     High High
cufflinks 14.761     High  
cufflinks 13.95     High  
cufflinks 14.69     High  
cufflinks 14.801     High  
cufflinks 16.301     High  
cufflinks 14.406     High  
cufflinks 17.877     High High

0 Strain