Gene : Glyma.16G078200 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR21068:SF5 - GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MIL23-RELATED Genomic Order:  782
Name:  ? Glyma.16G078200 Secondary Identifier:  ? PAC:30559801
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G078200 0.5kb upstream 0.5kb upstream 6218 true Chr16: 8060944-8067161 Glycine max
Glyma.16G078200 0.5kb upstream 0.5kb upstream 500 false Chr16: 8066662-8067161 Glycine max
Glyma.16G078200 0.5kb downstream 0.5kb downstream 6218 true Chr16: 8060444-8066661 Glycine max
Glyma.16G078200 0.5kb downstream 0.5kb downstream 500 false Chr16: 8060444-8060943 Glycine max
Glyma.16G078200 1.0kb upstream 1.0kb upstream 6718 true Chr16: 8060944-8067661 Glycine max
Glyma.16G078200 1.0kb upstream 1.0kb upstream 1000 false Chr16: 8066662-8067661 Glycine max
Glyma.16G078200 1.0kb downstream 1.0kb downstream 6718 true Chr16: 8059944-8066661 Glycine max
Glyma.16G078200 1.0kb downstream 1.0kb downstream 1000 false Chr16: 8059944-8060943 Glycine max
Glyma.16G078200 2.0kb upstream 2.0kb upstream 7718 true Chr16: 8060944-8068661 Glycine max
Glyma.16G078200 2.0kb upstream 2.0kb upstream 2000 false Chr16: 8066662-8068661 Glycine max
Glyma.16G078200 2.0kb downstream 2.0kb downstream 7718 true Chr16: 8058944-8066661 Glycine max
Glyma.16G078200 2.0kb downstream 2.0kb downstream 2000 false Chr16: 8058944-8060943 Glycine max
Glyma.16G078200 5.0kb upstream 5.0kb upstream 10718 true Chr16: 8060944-8071661 Glycine max
Glyma.16G078200 5.0kb upstream 5.0kb upstream 5000 false Chr16: 8066662-8071661 Glycine max
Glyma.16G078200 5.0kb downstream 5.0kb downstream 10718 true Chr16: 8055944-8066661 Glycine max
Glyma.16G078200 5.0kb downstream 5.0kb downstream 5000 false Chr16: 8055944-8060943 Glycine max
Glyma.16G078200 10.0kb upstream 10.0kb upstream 15718 true Chr16: 8060944-8076661 Glycine max
Glyma.16G078200 10.0kb upstream 10.0kb upstream 10000 false Chr16: 8066662-8076661 Glycine max
Glyma.16G078200 10.0kb downstream 10.0kb downstream 15718 true Chr16: 8050944-8066661 Glycine max
Glyma.16G078200 10.0kb downstream 10.0kb downstream 10000 false Chr16: 8050944-8060943 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026413 5273 Angiosperm View MSA
122296763 5265 Fabidae View MSA
124035773 5270 Rosid View MSA
123740247 5271 Pentapetalae View MSA
122787553 5272 Eudicot View MSA
121296318 5274 Embryophyte View MSA
123334500 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.09417 0.0 6.9306    
cufflinks 1.55322 0.0 5.33773    
cufflinks 1.97394 0.0 6.57763    
cufflinks 2.37281 0.0 7.7151    
cufflinks 2.94365 0.0 9.29362    
cufflinks 0.607728 0.0 2.23472   Low
cufflinks 0.448725 0.0 1.67501   Low
cufflinks 4.96447 0.0 14.5501   High
cufflinks 4.19544 0.0 12.6057   High
cufflinks 2.376        
cufflinks 2.976       High
cufflinks 0.995        
cufflinks 1.106        
cufflinks 0.293       Low
cufflinks 0.139       Low
cufflinks 0.674        
cufflinks 3.477       High
cufflinks 1.742        
cufflinks 0.24       Low
cufflinks 0.626        
cufflinks 3.005       High
cufflinks 0.869        
cufflinks 0.505        
cufflinks 2.995       High
cufflinks 0.752        
cufflinks 2.879       High

0 Strain