Gene : Glyma.16G057700 G. max Wm82.a2.v1
Defline:  (1 of 4) 2.1.1.190 - 23S rRNA (uracil(1939)-C(5))-methyltransferase / RNA uridine methyltransferase A Genomic Order:  577
Name:  ? Glyma.16G057700 Secondary Identifier:  ? PAC:30559024
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G057700 0.5kb upstream 0.5kb upstream 7213 true Chr16: 5656328-5663540 Glycine max
Glyma.16G057700 0.5kb upstream 0.5kb upstream 500 false Chr16: 5663041-5663540 Glycine max
Glyma.16G057700 0.5kb downstream 0.5kb downstream 7213 true Chr16: 5655828-5663040 Glycine max
Glyma.16G057700 0.5kb downstream 0.5kb downstream 500 false Chr16: 5655828-5656327 Glycine max
Glyma.16G057700 1.0kb upstream 1.0kb upstream 7713 true Chr16: 5656328-5664040 Glycine max
Glyma.16G057700 1.0kb upstream 1.0kb upstream 1000 false Chr16: 5663041-5664040 Glycine max
Glyma.16G057700 1.0kb downstream 1.0kb downstream 7713 true Chr16: 5655328-5663040 Glycine max
Glyma.16G057700 1.0kb downstream 1.0kb downstream 1000 false Chr16: 5655328-5656327 Glycine max
Glyma.16G057700 2.0kb upstream 2.0kb upstream 8713 true Chr16: 5656328-5665040 Glycine max
Glyma.16G057700 2.0kb upstream 2.0kb upstream 2000 false Chr16: 5663041-5665040 Glycine max
Glyma.16G057700 2.0kb downstream 2.0kb downstream 8713 true Chr16: 5654328-5663040 Glycine max
Glyma.16G057700 2.0kb downstream 2.0kb downstream 2000 false Chr16: 5654328-5656327 Glycine max
Glyma.16G057700 5.0kb upstream 5.0kb upstream 11713 true Chr16: 5656328-5668040 Glycine max
Glyma.16G057700 5.0kb upstream 5.0kb upstream 5000 false Chr16: 5663041-5668040 Glycine max
Glyma.16G057700 5.0kb downstream 5.0kb downstream 11713 true Chr16: 5651328-5663040 Glycine max
Glyma.16G057700 5.0kb downstream 5.0kb downstream 5000 false Chr16: 5651328-5656327 Glycine max
Glyma.16G057700 10.0kb upstream 10.0kb upstream 16713 true Chr16: 5656328-5673040 Glycine max
Glyma.16G057700 10.0kb upstream 10.0kb upstream 10000 false Chr16: 5663041-5673040 Glycine max
Glyma.16G057700 10.0kb downstream 10.0kb downstream 16713 true Chr16: 5646328-5663040 Glycine max
Glyma.16G057700 10.0kb downstream 10.0kb downstream 10000 false Chr16: 5646328-5656327 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303719 5265 Fabidae View MSA
124063737 5270 Rosid View MSA
123738222 5271 Pentapetalae View MSA
122796833 5272 Eudicot View MSA
122044630 5273 Angiosperm View MSA
121346457 5274 Embryophyte View MSA
123428846 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.4854 0.0 70.0573   High
cufflinks 10.5477 0.0 36.7559    
cufflinks 12.4968 0.0 43.1786    
cufflinks 9.52486 0.0 33.4961    
cufflinks 6.20499 0.0 23.5421    
cufflinks 3.27608 0.0 9.94746   Low
cufflinks 5.54791 0.0 22.3184    
cufflinks 11.0048 0.0 38.2902    
cufflinks 5.18187 0.0 20.6657    
cufflinks 1.124        
cufflinks 0.136       Low
cufflinks 1.88        
cufflinks 0.525        
cufflinks 0.571        
cufflinks 0.259        
cufflinks 3.909       High
cufflinks 0.358        
cufflinks 1.907        
cufflinks 1.707        
cufflinks 5.326       High
cufflinks 0.141       Low
cufflinks 4.398       High
cufflinks 3.808       High
cufflinks 0.187       Low
cufflinks 4.426       High
cufflinks 0.302        

0 Strain