Gene : Glyma.16G060800 G. max Wm82.a2.v1
Defline:  (1 of 24) PTHR31238:SF42 - GERMIN-LIKE PROTEIN SUBFAMILY 1 MEMBER 10-RELATED Genomic Order:  608
Name:  ? Glyma.16G060800 Secondary Identifier:  ? PAC:30560200
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G060800 0.5kb upstream 0.5kb upstream 1570 true Chr16: 5956377-5957946 Glycine max
Glyma.16G060800 0.5kb upstream 0.5kb upstream 500 false Chr16: 5956377-5956876 Glycine max
Glyma.16G060800 0.5kb downstream 0.5kb downstream 1570 true Chr16: 5956877-5958446 Glycine max
Glyma.16G060800 0.5kb downstream 0.5kb downstream 500 false Chr16: 5957947-5958446 Glycine max
Glyma.16G060800 1.0kb upstream 1.0kb upstream 2070 true Chr16: 5955877-5957946 Glycine max
Glyma.16G060800 1.0kb upstream 1.0kb upstream 1000 false Chr16: 5955877-5956876 Glycine max
Glyma.16G060800 1.0kb downstream 1.0kb downstream 2070 true Chr16: 5956877-5958946 Glycine max
Glyma.16G060800 1.0kb downstream 1.0kb downstream 1000 false Chr16: 5957947-5958946 Glycine max
Glyma.16G060800 2.0kb upstream 2.0kb upstream 3070 true Chr16: 5954877-5957946 Glycine max
Glyma.16G060800 2.0kb upstream 2.0kb upstream 2000 false Chr16: 5954877-5956876 Glycine max
Glyma.16G060800 2.0kb downstream 2.0kb downstream 3070 true Chr16: 5956877-5959946 Glycine max
Glyma.16G060800 2.0kb downstream 2.0kb downstream 2000 false Chr16: 5957947-5959946 Glycine max
Glyma.16G060800 5.0kb upstream 5.0kb upstream 6070 true Chr16: 5951877-5957946 Glycine max
Glyma.16G060800 5.0kb upstream 5.0kb upstream 5000 false Chr16: 5951877-5956876 Glycine max
Glyma.16G060800 5.0kb downstream 5.0kb downstream 6070 true Chr16: 5956877-5962946 Glycine max
Glyma.16G060800 5.0kb downstream 5.0kb downstream 5000 false Chr16: 5957947-5962946 Glycine max
Glyma.16G060800 10.0kb upstream 10.0kb upstream 11070 true Chr16: 5946877-5957946 Glycine max
Glyma.16G060800 10.0kb upstream 10.0kb upstream 10000 false Chr16: 5946877-5956876 Glycine max
Glyma.16G060800 10.0kb downstream 10.0kb downstream 11070 true Chr16: 5956877-5967946 Glycine max
Glyma.16G060800 10.0kb downstream 10.0kb downstream 10000 false Chr16: 5957947-5967946 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314979 5265 Fabidae View MSA
124073814 5270 Rosid View MSA
123752925 5271 Pentapetalae View MSA
122797163 5272 Eudicot View MSA
122049786 5273 Angiosperm View MSA
121349986 5274 Embryophyte View MSA
123427618 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0549845 0.0 0.234316 Low  
cufflinks 3.23553E-4 0.0 0.00608545 Low Low
cufflinks 2.76611E-4 0.0 0.00555206 Low Low
cufflinks 0.0879719 0.0 0.362286 Low  
cufflinks 110.514 0.0 311.901 High High
cufflinks 477.713 0.0 1778.47 High High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0576416 0.0 0.244399 Low  
cufflinks 109.989 0.0 310.533 High High
cufflinks 0.138        
cufflinks 464.003     High High
cufflinks 0.31        
cufflinks 51.795     High  
cufflinks 1.276        
cufflinks 39.581     High  
cufflinks 0.019     Low Low
cufflinks 80.285     High  
cufflinks 0.069     Low  
cufflinks 0.078     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 179.801     High  
cufflinks 0.048     Low Low
cufflinks 0.029     Low Low
cufflinks 608.219     High High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 696.662     High High

0 Strain