Gene : Glyma.16G104500 G. max Wm82.a2.v1
Defline:  (1 of 10) PF08381//PF13713 - Transcription factor regulating root and shoot growth via Pin3 (BRX) // Transcription factor BRX N-terminal domain (BRX_N) Genomic Order:  1045
Name:  ? Glyma.16G104500 Secondary Identifier:  ? PAC:30561164
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G104500 0.5kb upstream 0.5kb upstream 9099 true Chr16: 21194186-21203284 Glycine max
Glyma.16G104500 0.5kb upstream 0.5kb upstream 500 false Chr16: 21194186-21194685 Glycine max
Glyma.16G104500 0.5kb downstream 0.5kb downstream 9099 true Chr16: 21194686-21203784 Glycine max
Glyma.16G104500 0.5kb downstream 0.5kb downstream 500 false Chr16: 21203285-21203784 Glycine max
Glyma.16G104500 1.0kb upstream 1.0kb upstream 9599 true Chr16: 21193686-21203284 Glycine max
Glyma.16G104500 1.0kb upstream 1.0kb upstream 1000 false Chr16: 21193686-21194685 Glycine max
Glyma.16G104500 1.0kb downstream 1.0kb downstream 9599 true Chr16: 21194686-21204284 Glycine max
Glyma.16G104500 1.0kb downstream 1.0kb downstream 1000 false Chr16: 21203285-21204284 Glycine max
Glyma.16G104500 2.0kb upstream 2.0kb upstream 10599 true Chr16: 21192686-21203284 Glycine max
Glyma.16G104500 2.0kb upstream 2.0kb upstream 2000 false Chr16: 21192686-21194685 Glycine max
Glyma.16G104500 2.0kb downstream 2.0kb downstream 10599 true Chr16: 21194686-21205284 Glycine max
Glyma.16G104500 2.0kb downstream 2.0kb downstream 2000 false Chr16: 21203285-21205284 Glycine max
Glyma.16G104500 5.0kb upstream 5.0kb upstream 13599 true Chr16: 21189686-21203284 Glycine max
Glyma.16G104500 5.0kb upstream 5.0kb upstream 5000 false Chr16: 21189686-21194685 Glycine max
Glyma.16G104500 5.0kb downstream 5.0kb downstream 13599 true Chr16: 21194686-21208284 Glycine max
Glyma.16G104500 5.0kb downstream 5.0kb downstream 5000 false Chr16: 21203285-21208284 Glycine max
Glyma.16G104500 10.0kb upstream 10.0kb upstream 18599 true Chr16: 21184686-21203284 Glycine max
Glyma.16G104500 10.0kb upstream 10.0kb upstream 10000 false Chr16: 21184686-21194685 Glycine max
Glyma.16G104500 10.0kb downstream 10.0kb downstream 18599 true Chr16: 21194686-21213284 Glycine max
Glyma.16G104500 10.0kb downstream 10.0kb downstream 10000 false Chr16: 21203285-21213284 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301761 5265 Fabidae View MSA
124062514 5270 Rosid View MSA
123739591 5271 Pentapetalae View MSA
122790552 5272 Eudicot View MSA
122046038 5273 Angiosperm View MSA
121349129 5274 Embryophyte View MSA
123381183 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.75504 0.0 41.7833   High
cufflinks 0.95115 0.0 5.46633    
cufflinks 0.392651 0.0 1.91077    
cufflinks 0.975945 0.0 8.46651    
cufflinks 0.438819 0.0 2.87972    
cufflinks 0.277859 0.0 2.01672 Low  
cufflinks 1.63894 0.0 8.42884    
cufflinks 0.427271 0.0 2.03339    
cufflinks 0.483749 0.0 5.11122    
cufflinks 0.053     Low  
cufflinks 0.031     Low  
cufflinks 0.046     Low  
cufflinks 0.047     Low  
cufflinks 0.031     Low  
cufflinks 0.008     Low Low
cufflinks 0.125       High
cufflinks 0.025     Low  
cufflinks 0.05     Low  
cufflinks 0.054     Low  
cufflinks 0.095       High
cufflinks 0.031     Low  
cufflinks 0.116       High
cufflinks 0.085     Low  
cufflinks 0.026     Low  
cufflinks 0.086     Low  
cufflinks 0.039     Low  

0 Strain