Gene : Glyma.16G109600 G. max Wm82.a2.v1
Defline:  (1 of 477) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) Genomic Order:  1096
Name:  ? Glyma.16G109600 Secondary Identifier:  ? PAC:30560094
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G109600 0.5kb upstream 0.5kb upstream 1130 true Chr16: 23644690-23645819 Glycine max
Glyma.16G109600 0.5kb upstream 0.5kb upstream 500 false Chr16: 23644690-23645189 Glycine max
Glyma.16G109600 0.5kb downstream 0.5kb downstream 1130 true Chr16: 23645190-23646319 Glycine max
Glyma.16G109600 0.5kb downstream 0.5kb downstream 500 false Chr16: 23645820-23646319 Glycine max
Glyma.16G109600 1.0kb upstream 1.0kb upstream 1630 true Chr16: 23644190-23645819 Glycine max
Glyma.16G109600 1.0kb upstream 1.0kb upstream 1000 false Chr16: 23644190-23645189 Glycine max
Glyma.16G109600 1.0kb downstream 1.0kb downstream 1630 true Chr16: 23645190-23646819 Glycine max
Glyma.16G109600 1.0kb downstream 1.0kb downstream 1000 false Chr16: 23645820-23646819 Glycine max
Glyma.16G109600 2.0kb upstream 2.0kb upstream 2630 true Chr16: 23643190-23645819 Glycine max
Glyma.16G109600 2.0kb upstream 2.0kb upstream 2000 false Chr16: 23643190-23645189 Glycine max
Glyma.16G109600 2.0kb downstream 2.0kb downstream 2630 true Chr16: 23645190-23647819 Glycine max
Glyma.16G109600 2.0kb downstream 2.0kb downstream 2000 false Chr16: 23645820-23647819 Glycine max
Glyma.16G109600 5.0kb upstream 5.0kb upstream 5630 true Chr16: 23640190-23645819 Glycine max
Glyma.16G109600 5.0kb upstream 5.0kb upstream 5000 false Chr16: 23640190-23645189 Glycine max
Glyma.16G109600 5.0kb downstream 5.0kb downstream 5630 true Chr16: 23645190-23650819 Glycine max
Glyma.16G109600 5.0kb downstream 5.0kb downstream 5000 false Chr16: 23645820-23650819 Glycine max
Glyma.16G109600 10.0kb upstream 10.0kb upstream 10630 true Chr16: 23635190-23645819 Glycine max
Glyma.16G109600 10.0kb upstream 10.0kb upstream 10000 false Chr16: 23635190-23645189 Glycine max
Glyma.16G109600 10.0kb downstream 10.0kb downstream 10630 true Chr16: 23645190-23655819 Glycine max
Glyma.16G109600 10.0kb downstream 10.0kb downstream 10000 false Chr16: 23645820-23655819 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310597 5265 Fabidae View MSA
124040291 5270 Rosid View MSA
123753688 5271 Pentapetalae View MSA
122793597 5272 Eudicot View MSA
122051373 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121349952 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.62133 0.0 12.8478    
cufflinks 6.81888 0.0 22.7139   High
cufflinks 2.25303 0.0 8.2449   Low
cufflinks 2.47946 0.0 9.01491   Low
cufflinks 8.03036 0.0 26.1519   High
cufflinks 6.66923 0.0 22.3102   High
cufflinks 3.96134 0.0 13.952    
cufflinks 3.21147 0.0 11.4754    
cufflinks 3.78002 0.0 13.3553    
cufflinks 2.318       Low
cufflinks 8.523     High  
cufflinks 3.757       Low
cufflinks 6.791        
cufflinks 9.563     High High
cufflinks 8.635     High  
cufflinks 4.839        
cufflinks 4.56        
cufflinks 5.312        
cufflinks 5.705        
cufflinks 5.761        
cufflinks 15.763     High High
cufflinks 5.578        
cufflinks 5.813        
cufflinks 7.602     High  
cufflinks 4.602        
cufflinks 6.421     High  

0 Strain