Gene : Glyma.16G088400 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR31808:SF2 - F21O3.2 PROTEIN-RELATED Genomic Order:  884
Name:  ? Glyma.16G088400 Secondary Identifier:  ? PAC:30559732
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G088400 0.5kb upstream 0.5kb upstream 5193 true Chr16: 11225812-11231004 Glycine max
Glyma.16G088400 0.5kb upstream 0.5kb upstream 500 false Chr16: 11225812-11226311 Glycine max
Glyma.16G088400 0.5kb downstream 0.5kb downstream 5193 true Chr16: 11226312-11231504 Glycine max
Glyma.16G088400 0.5kb downstream 0.5kb downstream 500 false Chr16: 11231005-11231504 Glycine max
Glyma.16G088400 1.0kb upstream 1.0kb upstream 5693 true Chr16: 11225312-11231004 Glycine max
Glyma.16G088400 1.0kb upstream 1.0kb upstream 1000 false Chr16: 11225312-11226311 Glycine max
Glyma.16G088400 1.0kb downstream 1.0kb downstream 5693 true Chr16: 11226312-11232004 Glycine max
Glyma.16G088400 1.0kb downstream 1.0kb downstream 1000 false Chr16: 11231005-11232004 Glycine max
Glyma.16G088400 2.0kb upstream 2.0kb upstream 6693 true Chr16: 11224312-11231004 Glycine max
Glyma.16G088400 2.0kb upstream 2.0kb upstream 2000 false Chr16: 11224312-11226311 Glycine max
Glyma.16G088400 2.0kb downstream 2.0kb downstream 6693 true Chr16: 11226312-11233004 Glycine max
Glyma.16G088400 2.0kb downstream 2.0kb downstream 2000 false Chr16: 11231005-11233004 Glycine max
Glyma.16G088400 5.0kb upstream 5.0kb upstream 9693 true Chr16: 11221312-11231004 Glycine max
Glyma.16G088400 5.0kb upstream 5.0kb upstream 5000 false Chr16: 11221312-11226311 Glycine max
Glyma.16G088400 5.0kb downstream 5.0kb downstream 9693 true Chr16: 11226312-11236004 Glycine max
Glyma.16G088400 5.0kb downstream 5.0kb downstream 5000 false Chr16: 11231005-11236004 Glycine max
Glyma.16G088400 10.0kb upstream 10.0kb upstream 14693 true Chr16: 11216312-11231004 Glycine max
Glyma.16G088400 10.0kb upstream 10.0kb upstream 10000 false Chr16: 11216312-11226311 Glycine max
Glyma.16G088400 10.0kb downstream 10.0kb downstream 14693 true Chr16: 11226312-11241004 Glycine max
Glyma.16G088400 10.0kb downstream 10.0kb downstream 10000 false Chr16: 11231005-11241004 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299816 5265 Fabidae View MSA
124063966 5270 Rosid View MSA
123742613 5271 Pentapetalae View MSA
122790300 5272 Eudicot View MSA
122047287 5273 Angiosperm View MSA
121310722 5274 Embryophyte View MSA
123428654 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 32.1067 0.0 89.6236 High High
cufflinks 8.18228 0.0 22.0185    
cufflinks 10.9684 0.0 29.2738    
cufflinks 3.88859 0.0 11.1046    
cufflinks 8.64974 0.0 23.2745    
cufflinks 3.13891 0.0 9.21922   Low
cufflinks 3.17939 0.0 9.36827   Low
cufflinks 10.7421 0.0 28.6918    
cufflinks 11.1846 0.0 29.8566    
cufflinks 4.829        
cufflinks 11.279     High  
cufflinks 5.409        
cufflinks 1.705       Low
cufflinks 1.79       Low
cufflinks 17.318     High  
cufflinks 15.637     High  
cufflinks 2.395       Low
cufflinks 5.654        
cufflinks 6.102        
cufflinks 24.172     High High
cufflinks 24.957     High High
cufflinks 18.012     High  
cufflinks 11.468     High  
cufflinks 13.28     High  
cufflinks 20.029     High  
cufflinks 15.209     High  

0 Strain