Gene : Glyma.16G088900 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR12919:SF22 - 30S RIBOSOMAL PROTEIN S16, CHLOROPLASTIC Genomic Order:  889
Name:  ? Glyma.16G088900 Secondary Identifier:  ? PAC:30561418
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G088900 0.5kb upstream 0.5kb upstream 5251 true Chr16: 11339891-11345141 Glycine max
Glyma.16G088900 0.5kb upstream 0.5kb upstream 500 false Chr16: 11339891-11340390 Glycine max
Glyma.16G088900 0.5kb downstream 0.5kb downstream 5251 true Chr16: 11340391-11345641 Glycine max
Glyma.16G088900 0.5kb downstream 0.5kb downstream 500 false Chr16: 11345142-11345641 Glycine max
Glyma.16G088900 1.0kb upstream 1.0kb upstream 5751 true Chr16: 11339391-11345141 Glycine max
Glyma.16G088900 1.0kb upstream 1.0kb upstream 1000 false Chr16: 11339391-11340390 Glycine max
Glyma.16G088900 1.0kb downstream 1.0kb downstream 5751 true Chr16: 11340391-11346141 Glycine max
Glyma.16G088900 1.0kb downstream 1.0kb downstream 1000 false Chr16: 11345142-11346141 Glycine max
Glyma.16G088900 2.0kb upstream 2.0kb upstream 6751 true Chr16: 11338391-11345141 Glycine max
Glyma.16G088900 2.0kb upstream 2.0kb upstream 2000 false Chr16: 11338391-11340390 Glycine max
Glyma.16G088900 2.0kb downstream 2.0kb downstream 6751 true Chr16: 11340391-11347141 Glycine max
Glyma.16G088900 2.0kb downstream 2.0kb downstream 2000 false Chr16: 11345142-11347141 Glycine max
Glyma.16G088900 5.0kb upstream 5.0kb upstream 9751 true Chr16: 11335391-11345141 Glycine max
Glyma.16G088900 5.0kb upstream 5.0kb upstream 5000 false Chr16: 11335391-11340390 Glycine max
Glyma.16G088900 5.0kb downstream 5.0kb downstream 9751 true Chr16: 11340391-11350141 Glycine max
Glyma.16G088900 5.0kb downstream 5.0kb downstream 5000 false Chr16: 11345142-11350141 Glycine max
Glyma.16G088900 10.0kb upstream 10.0kb upstream 14751 true Chr16: 11330391-11345141 Glycine max
Glyma.16G088900 10.0kb upstream 10.0kb upstream 10000 false Chr16: 11330391-11340390 Glycine max
Glyma.16G088900 10.0kb downstream 10.0kb downstream 14751 true Chr16: 11340391-11355141 Glycine max
Glyma.16G088900 10.0kb downstream 10.0kb downstream 10000 false Chr16: 11345142-11355141 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029145 5273 Angiosperm View MSA
122247024 5265 Fabidae Singleton cluster - no MSA
124040415 5270 Rosid View MSA
123745165 5271 Pentapetalae View MSA
122796653 5272 Eudicot View MSA
121298528 5274 Embryophyte View MSA
123426601 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.314925 0.0 1.41314    
cufflinks 0.231727 0.0 1.06459 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.003     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.016     Low High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.004     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.009     Low  
cufflinks 0.004     Low  
cufflinks 0.011     Low  
cufflinks 0.023     Low High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.006     Low  
cufflinks 0.012     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.007     Low  
cufflinks 0.003     Low Low

0 Strain