Gene : Glyma.16G126200 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR11599:SF15 - PROTEASOME SUBUNIT ALPHA TYPE Genomic Order:  1262
Name:  ? Glyma.16G126200 Secondary Identifier:  ? PAC:30558892
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G126200 0.5kb upstream 0.5kb upstream 4088 true Chr16: 27742819-27746906 Glycine max
Glyma.16G126200 0.5kb upstream 0.5kb upstream 500 false Chr16: 27746407-27746906 Glycine max
Glyma.16G126200 0.5kb downstream 0.5kb downstream 4088 true Chr16: 27742319-27746406 Glycine max
Glyma.16G126200 0.5kb downstream 0.5kb downstream 500 false Chr16: 27742319-27742818 Glycine max
Glyma.16G126200 1.0kb upstream 1.0kb upstream 4588 true Chr16: 27742819-27747406 Glycine max
Glyma.16G126200 1.0kb upstream 1.0kb upstream 1000 false Chr16: 27746407-27747406 Glycine max
Glyma.16G126200 1.0kb downstream 1.0kb downstream 4588 true Chr16: 27741819-27746406 Glycine max
Glyma.16G126200 1.0kb downstream 1.0kb downstream 1000 false Chr16: 27741819-27742818 Glycine max
Glyma.16G126200 2.0kb upstream 2.0kb upstream 5588 true Chr16: 27742819-27748406 Glycine max
Glyma.16G126200 2.0kb upstream 2.0kb upstream 2000 false Chr16: 27746407-27748406 Glycine max
Glyma.16G126200 2.0kb downstream 2.0kb downstream 5588 true Chr16: 27740819-27746406 Glycine max
Glyma.16G126200 2.0kb downstream 2.0kb downstream 2000 false Chr16: 27740819-27742818 Glycine max
Glyma.16G126200 5.0kb upstream 5.0kb upstream 8588 true Chr16: 27742819-27751406 Glycine max
Glyma.16G126200 5.0kb upstream 5.0kb upstream 5000 false Chr16: 27746407-27751406 Glycine max
Glyma.16G126200 5.0kb downstream 5.0kb downstream 8588 true Chr16: 27737819-27746406 Glycine max
Glyma.16G126200 5.0kb downstream 5.0kb downstream 5000 false Chr16: 27737819-27742818 Glycine max
Glyma.16G126200 10.0kb upstream 10.0kb upstream 13588 true Chr16: 27742819-27756406 Glycine max
Glyma.16G126200 10.0kb upstream 10.0kb upstream 10000 false Chr16: 27746407-27756406 Glycine max
Glyma.16G126200 10.0kb downstream 10.0kb downstream 13588 true Chr16: 27732819-27746406 Glycine max
Glyma.16G126200 10.0kb downstream 10.0kb downstream 10000 false Chr16: 27732819-27742818 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122247399 5265 Fabidae Singleton cluster - no MSA
124068334 5270 Rosid View MSA
123740517 5271 Pentapetalae View MSA
122792834 5272 Eudicot View MSA
122042824 5273 Angiosperm View MSA
121345155 5274 Embryophyte View MSA
123424719 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 40.6094 0.0 147.252 High  
cufflinks 56.5584 0.0 219.098 High  
cufflinks 33.9979 0.0 121.164 High Low
cufflinks 38.8822 0.0 146.784 High  
cufflinks 70.7115 0.0 296.112 High High
cufflinks 86.7082 0.0 384.977 High High
cufflinks 43.3851 0.0 161.217 High  
cufflinks 60.8973 0.0 239.712 High  
cufflinks 52.7916 0.0 202.751 High  
cufflinks 11.215     High  
cufflinks 2.699       Low
cufflinks 5.718        
cufflinks 15.163     High High
cufflinks 17.984     High High
cufflinks 2.013       Low
cufflinks 8.417     High  
cufflinks 5.016        
cufflinks 7.363     High  
cufflinks 10.132     High  
cufflinks 5.785        
cufflinks 4.322        
cufflinks 6.706        
cufflinks 9.258     High  
cufflinks 4.005        
cufflinks 6.25        
cufflinks 6.336     High  

0 Strain