Gene : Glyma.16G130400 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR27000:SF26 - F10A5.16 Genomic Order:  1304
Name:  ? Glyma.16G130400 Secondary Identifier:  ? PAC:30562217
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G130400 0.5kb upstream 0.5kb upstream 4788 true Chr16: 28390495-28395282 Glycine max
Glyma.16G130400 0.5kb upstream 0.5kb upstream 500 false Chr16: 28394783-28395282 Glycine max
Glyma.16G130400 0.5kb downstream 0.5kb downstream 4788 true Chr16: 28389995-28394782 Glycine max
Glyma.16G130400 0.5kb downstream 0.5kb downstream 500 false Chr16: 28389995-28390494 Glycine max
Glyma.16G130400 1.0kb upstream 1.0kb upstream 5288 true Chr16: 28390495-28395782 Glycine max
Glyma.16G130400 1.0kb upstream 1.0kb upstream 1000 false Chr16: 28394783-28395782 Glycine max
Glyma.16G130400 1.0kb downstream 1.0kb downstream 5288 true Chr16: 28389495-28394782 Glycine max
Glyma.16G130400 1.0kb downstream 1.0kb downstream 1000 false Chr16: 28389495-28390494 Glycine max
Glyma.16G130400 2.0kb upstream 2.0kb upstream 6288 true Chr16: 28390495-28396782 Glycine max
Glyma.16G130400 2.0kb upstream 2.0kb upstream 2000 false Chr16: 28394783-28396782 Glycine max
Glyma.16G130400 2.0kb downstream 2.0kb downstream 6288 true Chr16: 28388495-28394782 Glycine max
Glyma.16G130400 2.0kb downstream 2.0kb downstream 2000 false Chr16: 28388495-28390494 Glycine max
Glyma.16G130400 5.0kb upstream 5.0kb upstream 9288 true Chr16: 28390495-28399782 Glycine max
Glyma.16G130400 5.0kb upstream 5.0kb upstream 5000 false Chr16: 28394783-28399782 Glycine max
Glyma.16G130400 5.0kb downstream 5.0kb downstream 9288 true Chr16: 28385495-28394782 Glycine max
Glyma.16G130400 5.0kb downstream 5.0kb downstream 5000 false Chr16: 28385495-28390494 Glycine max
Glyma.16G130400 10.0kb upstream 10.0kb upstream 14288 true Chr16: 28390495-28404782 Glycine max
Glyma.16G130400 10.0kb upstream 10.0kb upstream 10000 false Chr16: 28394783-28404782 Glycine max
Glyma.16G130400 10.0kb downstream 10.0kb downstream 14288 true Chr16: 28380495-28394782 Glycine max
Glyma.16G130400 10.0kb downstream 10.0kb downstream 10000 false Chr16: 28380495-28390494 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122250022 5265 Fabidae Singleton cluster - no MSA
124072854 5270 Rosid View MSA
123749068 5271 Pentapetalae View MSA
122791157 5272 Eudicot View MSA
122043000 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121350177 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0294269 0.0 0.117805 Low Low
cufflinks 0.578813 0.0 1.98207    
cufflinks 0.0640305 0.0 0.249402 Low  
cufflinks 0.145558 0.0 0.546493 Low  
cufflinks 0.135023 0.0 0.508062 Low  
cufflinks 0.786885 0.0 2.589   High
cufflinks 0.0442218 0.0 0.174476 Low Low
cufflinks 0.828185 0.0 2.71005   High
cufflinks 0.214207 0.0 0.788393 Low  
cufflinks 0.589       High
cufflinks 0.04     Low  
cufflinks 0.33        
cufflinks 0.011     Low Low
cufflinks 0.025     Low  
cufflinks 0.009     Low Low
cufflinks 0.201        
cufflinks 0.007     Low Low
cufflinks 0.545       High
cufflinks 0.781       High
cufflinks 0.113        
cufflinks 0.122        
cufflinks 0.11        
cufflinks 0.297        
cufflinks 0.019     Low Low
cufflinks 0.127        
cufflinks 0.071        

0 Strain