Gene : Glyma.16G132100 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR31604:SF3 - PROTEIN SHI RELATED SEQUENCE 1-RELATED Genomic Order:  1321
Name:  ? Glyma.16G132100 Secondary Identifier:  ? PAC:30561348
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G132100 0.5kb upstream 0.5kb upstream 3665 true Chr16: 28809242-28812906 Glycine max
Glyma.16G132100 0.5kb upstream 0.5kb upstream 500 false Chr16: 28812407-28812906 Glycine max
Glyma.16G132100 0.5kb downstream 0.5kb downstream 3665 true Chr16: 28808742-28812406 Glycine max
Glyma.16G132100 0.5kb downstream 0.5kb downstream 500 false Chr16: 28808742-28809241 Glycine max
Glyma.16G132100 1.0kb upstream 1.0kb upstream 4165 true Chr16: 28809242-28813406 Glycine max
Glyma.16G132100 1.0kb upstream 1.0kb upstream 1000 false Chr16: 28812407-28813406 Glycine max
Glyma.16G132100 1.0kb downstream 1.0kb downstream 4165 true Chr16: 28808242-28812406 Glycine max
Glyma.16G132100 1.0kb downstream 1.0kb downstream 1000 false Chr16: 28808242-28809241 Glycine max
Glyma.16G132100 2.0kb upstream 2.0kb upstream 5165 true Chr16: 28809242-28814406 Glycine max
Glyma.16G132100 2.0kb upstream 2.0kb upstream 2000 false Chr16: 28812407-28814406 Glycine max
Glyma.16G132100 2.0kb downstream 2.0kb downstream 5165 true Chr16: 28807242-28812406 Glycine max
Glyma.16G132100 2.0kb downstream 2.0kb downstream 2000 false Chr16: 28807242-28809241 Glycine max
Glyma.16G132100 5.0kb upstream 5.0kb upstream 8165 true Chr16: 28809242-28817406 Glycine max
Glyma.16G132100 5.0kb upstream 5.0kb upstream 5000 false Chr16: 28812407-28817406 Glycine max
Glyma.16G132100 5.0kb downstream 5.0kb downstream 8165 true Chr16: 28804242-28812406 Glycine max
Glyma.16G132100 5.0kb downstream 5.0kb downstream 5000 false Chr16: 28804242-28809241 Glycine max
Glyma.16G132100 10.0kb upstream 10.0kb upstream 13165 true Chr16: 28809242-28822406 Glycine max
Glyma.16G132100 10.0kb upstream 10.0kb upstream 10000 false Chr16: 28812407-28822406 Glycine max
Glyma.16G132100 10.0kb downstream 10.0kb downstream 13165 true Chr16: 28799242-28812406 Glycine max
Glyma.16G132100 10.0kb downstream 10.0kb downstream 10000 false Chr16: 28799242-28809241 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311985 5265 Fabidae View MSA
124067577 5270 Rosid View MSA
123749314 5271 Pentapetalae View MSA
122796752 5272 Eudicot View MSA
122049669 5273 Angiosperm View MSA
121344202 5274 Embryophyte View MSA
123379999 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.188372 0.0 0.912964 Low Low
cufflinks 4.9195 0.0 22.9434   High
cufflinks 1.13924 0.0 7.58022    
cufflinks 0.790181 0.0 5.66765    
cufflinks 0.486524 0.0 3.0378    
cufflinks 0.687104 0.0 4.45869    
cufflinks 0.469355 0.0 2.91972    
cufflinks 0.769523 0.0 5.56916    
cufflinks 3.54114 0.0 18.6026   High
cufflinks 0.077     Low  
cufflinks 0.009     Low Low
cufflinks 0.32       High
cufflinks 0.027     Low  
cufflinks 0.006     Low Low
cufflinks 0.139        
cufflinks 0.097     Low  
cufflinks 0.031     Low  
cufflinks 0.279       High
cufflinks 1.229       High
cufflinks 0.043     Low  
cufflinks 0.012     Low Low
cufflinks 0.089     Low  
cufflinks 0.049     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.048     Low  
cufflinks 0.039     Low  

0 Strain