Gene : Glyma.16G120200 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR12161:SF19 - REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN Genomic Order:  1202
Name:  ? Glyma.16G120200 Secondary Identifier:  ? PAC:30561592
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G120200 0.5kb upstream 0.5kb upstream 4797 true Chr16: 26823272-26828068 Glycine max
Glyma.16G120200 0.5kb upstream 0.5kb upstream 500 false Chr16: 26823272-26823771 Glycine max
Glyma.16G120200 0.5kb downstream 0.5kb downstream 4797 true Chr16: 26823772-26828568 Glycine max
Glyma.16G120200 0.5kb downstream 0.5kb downstream 500 false Chr16: 26828069-26828568 Glycine max
Glyma.16G120200 1.0kb upstream 1.0kb upstream 5297 true Chr16: 26822772-26828068 Glycine max
Glyma.16G120200 1.0kb upstream 1.0kb upstream 1000 false Chr16: 26822772-26823771 Glycine max
Glyma.16G120200 1.0kb downstream 1.0kb downstream 5297 true Chr16: 26823772-26829068 Glycine max
Glyma.16G120200 1.0kb downstream 1.0kb downstream 1000 false Chr16: 26828069-26829068 Glycine max
Glyma.16G120200 2.0kb upstream 2.0kb upstream 6297 true Chr16: 26821772-26828068 Glycine max
Glyma.16G120200 2.0kb upstream 2.0kb upstream 2000 false Chr16: 26821772-26823771 Glycine max
Glyma.16G120200 2.0kb downstream 2.0kb downstream 6297 true Chr16: 26823772-26830068 Glycine max
Glyma.16G120200 2.0kb downstream 2.0kb downstream 2000 false Chr16: 26828069-26830068 Glycine max
Glyma.16G120200 5.0kb upstream 5.0kb upstream 9297 true Chr16: 26818772-26828068 Glycine max
Glyma.16G120200 5.0kb upstream 5.0kb upstream 5000 false Chr16: 26818772-26823771 Glycine max
Glyma.16G120200 5.0kb downstream 5.0kb downstream 9297 true Chr16: 26823772-26833068 Glycine max
Glyma.16G120200 5.0kb downstream 5.0kb downstream 5000 false Chr16: 26828069-26833068 Glycine max
Glyma.16G120200 10.0kb upstream 10.0kb upstream 14297 true Chr16: 26813772-26828068 Glycine max
Glyma.16G120200 10.0kb upstream 10.0kb upstream 10000 false Chr16: 26813772-26823771 Glycine max
Glyma.16G120200 10.0kb downstream 10.0kb downstream 14297 true Chr16: 26823772-26838068 Glycine max
Glyma.16G120200 10.0kb downstream 10.0kb downstream 10000 false Chr16: 26828069-26838068 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026573 5273 Angiosperm View MSA
122302069 5265 Fabidae View MSA
124050952 5270 Rosid View MSA
123738388 5271 Pentapetalae View MSA
122790971 5272 Eudicot View MSA
121350449 5274 Embryophyte View MSA
123424640 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.189856 0.0 0.728385 Low Low
cufflinks 6.10487 0.0 16.9941    
cufflinks 0.821757 0.0 2.91032    
cufflinks 3.26071 0.0 9.77175    
cufflinks 2.94378 0.0 8.96355    
cufflinks 1.55548 0.0 5.1742    
cufflinks 10.6748 0.0 28.6963   High
cufflinks 3.49212 0.0 10.3656    
cufflinks 2.79734 0.0 8.57547    
cufflinks 1.906        
cufflinks 0.185       Low
cufflinks 1.264        
cufflinks 1.73        
cufflinks 1.979        
cufflinks 0.316       Low
cufflinks 2.512        
cufflinks 0.621        
cufflinks 1.23        
cufflinks 3.271       High
cufflinks 2.103        
cufflinks 0.533        
cufflinks 2.082        
cufflinks 2.272        
cufflinks 0.229       Low
cufflinks 2.278        
cufflinks 0.546        

0 Strain