Gene : Glyma.16G162600 G. max Wm82.a2.v1
Defline:  (1 of 7) PTHR21649:SF26 - CHLOROPHYLL A-B BINDING PROTEIN 1, CHLOROPLASTIC-RELATED Genomic Order:  1626
Name:  ? Glyma.16G162600 Secondary Identifier:  ? PAC:30562074
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G162600 0.5kb upstream 0.5kb upstream 1011 true Chr16: 32154217-32155227 Glycine max
Glyma.16G162600 0.5kb upstream 0.5kb upstream 500 false Chr16: 32154217-32154716 Glycine max
Glyma.16G162600 0.5kb downstream 0.5kb downstream 1011 true Chr16: 32154717-32155727 Glycine max
Glyma.16G162600 0.5kb downstream 0.5kb downstream 500 false Chr16: 32155228-32155727 Glycine max
Glyma.16G162600 1.0kb upstream 1.0kb upstream 1511 true Chr16: 32153717-32155227 Glycine max
Glyma.16G162600 1.0kb upstream 1.0kb upstream 1000 false Chr16: 32153717-32154716 Glycine max
Glyma.16G162600 1.0kb downstream 1.0kb downstream 1511 true Chr16: 32154717-32156227 Glycine max
Glyma.16G162600 1.0kb downstream 1.0kb downstream 1000 false Chr16: 32155228-32156227 Glycine max
Glyma.16G162600 2.0kb upstream 2.0kb upstream 2511 true Chr16: 32152717-32155227 Glycine max
Glyma.16G162600 2.0kb upstream 2.0kb upstream 2000 false Chr16: 32152717-32154716 Glycine max
Glyma.16G162600 2.0kb downstream 2.0kb downstream 2511 true Chr16: 32154717-32157227 Glycine max
Glyma.16G162600 2.0kb downstream 2.0kb downstream 2000 false Chr16: 32155228-32157227 Glycine max
Glyma.16G162600 5.0kb upstream 5.0kb upstream 5511 true Chr16: 32149717-32155227 Glycine max
Glyma.16G162600 5.0kb upstream 5.0kb upstream 5000 false Chr16: 32149717-32154716 Glycine max
Glyma.16G162600 5.0kb downstream 5.0kb downstream 5511 true Chr16: 32154717-32160227 Glycine max
Glyma.16G162600 5.0kb downstream 5.0kb downstream 5000 false Chr16: 32155228-32160227 Glycine max
Glyma.16G162600 10.0kb upstream 10.0kb upstream 10511 true Chr16: 32144717-32155227 Glycine max
Glyma.16G162600 10.0kb upstream 10.0kb upstream 10000 false Chr16: 32144717-32154716 Glycine max
Glyma.16G162600 10.0kb downstream 10.0kb downstream 10511 true Chr16: 32154717-32165227 Glycine max
Glyma.16G162600 10.0kb downstream 10.0kb downstream 10000 false Chr16: 32155228-32165227 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122249993 5265 Fabidae Singleton cluster - no MSA
124051137 5270 Rosid View MSA
123751711 5271 Pentapetalae View MSA
122794402 5272 Eudicot View MSA
122050341 5273 Angiosperm View MSA
121349648 5274 Embryophyte View MSA
123426313 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.101552 0.0 0.435045 Low  
cufflinks 1.07392 0.0 4.10144   High
cufflinks 0.200577 0.0 0.820075 Low  
cufflinks 0.464408 0.0 1.83469    
cufflinks 0.148564 0.0 0.617007 Low  
cufflinks 0.217642 0.0 0.885835 Low  
cufflinks 0.773548 0.0 2.99495    
cufflinks 0.757567 0.0 2.9327    
cufflinks 0.00654812 0.0 0.0422919 Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.093     Low  
cufflinks 0.03     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.381        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.05     Low Low
cufflinks 0.053     Low  
cufflinks 0.284        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.427        
cufflinks 0.433        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.827       High
cufflinks 0.0     Not Expressed Not Expressed

0 Strain