Gene : Glyma.16G171900 G. max Wm82.a2.v1
Defline:  (1 of 1) PF00415//PF16457 - Regulator of chromosome condensation (RCC1) repeat (RCC1) // Pleckstrin homology domain (PH_12) Genomic Order:  1719
Name:  ? Glyma.16G171900 Secondary Identifier:  ? PAC:30560181
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G171900 0.5kb upstream 0.5kb upstream 9156 true Chr16: 33246932-33256087 Glycine max
Glyma.16G171900 0.5kb upstream 0.5kb upstream 500 false Chr16: 33255588-33256087 Glycine max
Glyma.16G171900 0.5kb downstream 0.5kb downstream 9156 true Chr16: 33246432-33255587 Glycine max
Glyma.16G171900 0.5kb downstream 0.5kb downstream 500 false Chr16: 33246432-33246931 Glycine max
Glyma.16G171900 1.0kb upstream 1.0kb upstream 9656 true Chr16: 33246932-33256587 Glycine max
Glyma.16G171900 1.0kb upstream 1.0kb upstream 1000 false Chr16: 33255588-33256587 Glycine max
Glyma.16G171900 1.0kb downstream 1.0kb downstream 9656 true Chr16: 33245932-33255587 Glycine max
Glyma.16G171900 1.0kb downstream 1.0kb downstream 1000 false Chr16: 33245932-33246931 Glycine max
Glyma.16G171900 2.0kb upstream 2.0kb upstream 10656 true Chr16: 33246932-33257587 Glycine max
Glyma.16G171900 2.0kb upstream 2.0kb upstream 2000 false Chr16: 33255588-33257587 Glycine max
Glyma.16G171900 2.0kb downstream 2.0kb downstream 10656 true Chr16: 33244932-33255587 Glycine max
Glyma.16G171900 2.0kb downstream 2.0kb downstream 2000 false Chr16: 33244932-33246931 Glycine max
Glyma.16G171900 5.0kb upstream 5.0kb upstream 13656 true Chr16: 33246932-33260587 Glycine max
Glyma.16G171900 5.0kb upstream 5.0kb upstream 5000 false Chr16: 33255588-33260587 Glycine max
Glyma.16G171900 5.0kb downstream 5.0kb downstream 13656 true Chr16: 33241932-33255587 Glycine max
Glyma.16G171900 5.0kb downstream 5.0kb downstream 5000 false Chr16: 33241932-33246931 Glycine max
Glyma.16G171900 10.0kb upstream 10.0kb upstream 18656 true Chr16: 33246932-33265587 Glycine max
Glyma.16G171900 10.0kb upstream 10.0kb upstream 10000 false Chr16: 33255588-33265587 Glycine max
Glyma.16G171900 10.0kb downstream 10.0kb downstream 18656 true Chr16: 33236932-33255587 Glycine max
Glyma.16G171900 10.0kb downstream 10.0kb downstream 10000 false Chr16: 33236932-33246931 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122254592 5265 Fabidae View MSA
124039890 5270 Rosid View MSA
123747900 5271 Pentapetalae View MSA
122788222 5272 Eudicot View MSA
122050180 5273 Angiosperm View MSA
121311783 5274 Embryophyte View MSA
123428657 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.3623 0.0 50.058    
cufflinks 26.0785 0.0 73.375 High  
cufflinks 21.2942 0.0 58.9337 High  
cufflinks 26.1305 0.0 73.6221 High  
cufflinks 18.3817 0.0 50.0828    
cufflinks 24.2843 0.0 67.8619 High  
cufflinks 33.4735 0.0 96.9313 High High
cufflinks 10.9905 0.0 29.3467   Low
cufflinks 16.5237 0.0 44.7625    
cufflinks 2.471       Low
cufflinks 6.109     High  
cufflinks 6.27        
cufflinks 2.956        
cufflinks 2.825        
cufflinks 1.831       Low
cufflinks 8.198     High  
cufflinks 3.029        
cufflinks 5.719        
cufflinks 6.846        
cufflinks 10.318     High High
cufflinks 3.379        
cufflinks 10.467     High High
cufflinks 4.542        
cufflinks 6.312     High  
cufflinks 9.252     High High
cufflinks 2.921        

0 Strain