Gene : Glyma.16G140200 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR10126 - TATA-BOX BINDING PROTEIN Genomic Order:  1402
Name:  ? Glyma.16G140200 Secondary Identifier:  ? PAC:30560786
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G140200 0.5kb upstream 0.5kb upstream 4985 true Chr16: 29758574-29763558 Glycine max
Glyma.16G140200 0.5kb upstream 0.5kb upstream 500 false Chr16: 29763059-29763558 Glycine max
Glyma.16G140200 0.5kb downstream 0.5kb downstream 4985 true Chr16: 29758074-29763058 Glycine max
Glyma.16G140200 0.5kb downstream 0.5kb downstream 500 false Chr16: 29758074-29758573 Glycine max
Glyma.16G140200 1.0kb upstream 1.0kb upstream 5485 true Chr16: 29758574-29764058 Glycine max
Glyma.16G140200 1.0kb upstream 1.0kb upstream 1000 false Chr16: 29763059-29764058 Glycine max
Glyma.16G140200 1.0kb downstream 1.0kb downstream 5485 true Chr16: 29757574-29763058 Glycine max
Glyma.16G140200 1.0kb downstream 1.0kb downstream 1000 false Chr16: 29757574-29758573 Glycine max
Glyma.16G140200 2.0kb upstream 2.0kb upstream 6485 true Chr16: 29758574-29765058 Glycine max
Glyma.16G140200 2.0kb upstream 2.0kb upstream 2000 false Chr16: 29763059-29765058 Glycine max
Glyma.16G140200 2.0kb downstream 2.0kb downstream 6485 true Chr16: 29756574-29763058 Glycine max
Glyma.16G140200 2.0kb downstream 2.0kb downstream 2000 false Chr16: 29756574-29758573 Glycine max
Glyma.16G140200 5.0kb upstream 5.0kb upstream 9485 true Chr16: 29758574-29768058 Glycine max
Glyma.16G140200 5.0kb upstream 5.0kb upstream 5000 false Chr16: 29763059-29768058 Glycine max
Glyma.16G140200 5.0kb downstream 5.0kb downstream 9485 true Chr16: 29753574-29763058 Glycine max
Glyma.16G140200 5.0kb downstream 5.0kb downstream 5000 false Chr16: 29753574-29758573 Glycine max
Glyma.16G140200 10.0kb upstream 10.0kb upstream 14485 true Chr16: 29758574-29773058 Glycine max
Glyma.16G140200 10.0kb upstream 10.0kb upstream 10000 false Chr16: 29763059-29773058 Glycine max
Glyma.16G140200 10.0kb downstream 10.0kb downstream 14485 true Chr16: 29748574-29763058 Glycine max
Glyma.16G140200 10.0kb downstream 10.0kb downstream 10000 false Chr16: 29748574-29758573 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300671 5265 Fabidae View MSA
124067896 5270 Rosid View MSA
123751574 5271 Pentapetalae View MSA
122793638 5272 Eudicot View MSA
122046126 5273 Angiosperm View MSA
123429185 5275 Viridiplantae View MSA
121349658 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.7784 0.0 96.6748 High  
cufflinks 22.6359 0.0 104.791 High  
cufflinks 17.7027 0.0 83.4545   Low
cufflinks 20.0969 0.0 96.3688 High  
cufflinks 19.7321 0.0 84.3036    
cufflinks 27.4042 0.0 116.44 High High
cufflinks 20.1489 0.0 87.104    
cufflinks 20.356 0.0 97.0634    
cufflinks 22.9073 0.0 104.36 High  
cufflinks 0.643       Low
cufflinks 1.044        
cufflinks 1.085        
cufflinks 1.286       High
cufflinks 1.169       High
cufflinks 0.787       Low
cufflinks 1.01        
cufflinks 0.805       Low
cufflinks 1.1        
cufflinks 0.946        
cufflinks 1.065        
cufflinks 0.864        
cufflinks 1.128        
cufflinks 0.9        
cufflinks 1.134        
cufflinks 1.038        
cufflinks 0.932        

0 Strain