Gene : Glyma.16G141700 G. max Wm82.a2.v1
Defline:  (1 of 10) 2.5.1.29 - Geranylgeranyl diphosphate synthase / Geranylgeranyl-PP synthetase Genomic Order:  1417
Name:  ? Glyma.16G141700 Secondary Identifier:  ? PAC:30559202
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-5120 Glycine max pathologic  
Gmax PWY-5910 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G141700 0.5kb upstream 0.5kb upstream 2227 true Chr16: 30005272-30007498 Glycine max
Glyma.16G141700 0.5kb upstream 0.5kb upstream 500 false Chr16: 30005272-30005771 Glycine max
Glyma.16G141700 0.5kb downstream 0.5kb downstream 2227 true Chr16: 30005772-30007998 Glycine max
Glyma.16G141700 0.5kb downstream 0.5kb downstream 500 false Chr16: 30007499-30007998 Glycine max
Glyma.16G141700 1.0kb upstream 1.0kb upstream 2727 true Chr16: 30004772-30007498 Glycine max
Glyma.16G141700 1.0kb upstream 1.0kb upstream 1000 false Chr16: 30004772-30005771 Glycine max
Glyma.16G141700 1.0kb downstream 1.0kb downstream 2727 true Chr16: 30005772-30008498 Glycine max
Glyma.16G141700 1.0kb downstream 1.0kb downstream 1000 false Chr16: 30007499-30008498 Glycine max
Glyma.16G141700 2.0kb upstream 2.0kb upstream 3727 true Chr16: 30003772-30007498 Glycine max
Glyma.16G141700 2.0kb upstream 2.0kb upstream 2000 false Chr16: 30003772-30005771 Glycine max
Glyma.16G141700 2.0kb downstream 2.0kb downstream 3727 true Chr16: 30005772-30009498 Glycine max
Glyma.16G141700 2.0kb downstream 2.0kb downstream 2000 false Chr16: 30007499-30009498 Glycine max
Glyma.16G141700 5.0kb upstream 5.0kb upstream 6727 true Chr16: 30000772-30007498 Glycine max
Glyma.16G141700 5.0kb upstream 5.0kb upstream 5000 false Chr16: 30000772-30005771 Glycine max
Glyma.16G141700 5.0kb downstream 5.0kb downstream 6727 true Chr16: 30005772-30012498 Glycine max
Glyma.16G141700 5.0kb downstream 5.0kb downstream 5000 false Chr16: 30007499-30012498 Glycine max
Glyma.16G141700 10.0kb upstream 10.0kb upstream 11727 true Chr16: 29995772-30007498 Glycine max
Glyma.16G141700 10.0kb upstream 10.0kb upstream 10000 false Chr16: 29995772-30005771 Glycine max
Glyma.16G141700 10.0kb downstream 10.0kb downstream 11727 true Chr16: 30005772-30017498 Glycine max
Glyma.16G141700 10.0kb downstream 10.0kb downstream 10000 false Chr16: 30007499-30017498 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300633 5265 Fabidae View MSA
124062615 5270 Rosid View MSA
123750127 5271 Pentapetalae View MSA
122794006 5272 Eudicot View MSA
122045672 5273 Angiosperm View MSA
121348382 5274 Embryophyte View MSA
123424390 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.0584 0.0 30.0629    
cufflinks 8.95756 0.0 24.8022    
cufflinks 7.45464 0.0 21.1779    
cufflinks 9.42939 0.0 26.0035    
cufflinks 9.80453 0.0 26.7391    
cufflinks 3.33964 0.0 10.3749   Low
cufflinks 8.08421 0.0 22.4399    
cufflinks 9.41813 0.0 25.9426    
cufflinks 9.94427 0.0 27.1985    
cufflinks 9.669     High  
cufflinks 1.061       Low
cufflinks 5.603        
cufflinks 2.373        
cufflinks 1.922        
cufflinks 2.92        
cufflinks 8.004     High  
cufflinks 7.71     High  
cufflinks 7.836     High  
cufflinks 8.179     High  
cufflinks 7.41     High  
cufflinks 1.178       Low
cufflinks 7.501     High  
cufflinks 16.059     High High
cufflinks 1.832       Low
cufflinks 6.447        
cufflinks 1.619       Low

0 Strain