Gene : Glyma.16G142300 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR16201:SF43 - PQ-LOOP REPEAT FAMILY PROTEIN / TRANSMEMBRANE FAMILY PROTEIN Genomic Order:  1423
Name:  ? Glyma.16G142300 Secondary Identifier:  ? PAC:30559310
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G142300 0.5kb upstream 0.5kb upstream 5789 true Chr16: 30086178-30091966 Glycine max
Glyma.16G142300 0.5kb upstream 0.5kb upstream 500 false Chr16: 30091467-30091966 Glycine max
Glyma.16G142300 0.5kb downstream 0.5kb downstream 5789 true Chr16: 30085678-30091466 Glycine max
Glyma.16G142300 0.5kb downstream 0.5kb downstream 500 false Chr16: 30085678-30086177 Glycine max
Glyma.16G142300 1.0kb upstream 1.0kb upstream 6289 true Chr16: 30086178-30092466 Glycine max
Glyma.16G142300 1.0kb upstream 1.0kb upstream 1000 false Chr16: 30091467-30092466 Glycine max
Glyma.16G142300 1.0kb downstream 1.0kb downstream 6289 true Chr16: 30085178-30091466 Glycine max
Glyma.16G142300 1.0kb downstream 1.0kb downstream 1000 false Chr16: 30085178-30086177 Glycine max
Glyma.16G142300 2.0kb upstream 2.0kb upstream 7289 true Chr16: 30086178-30093466 Glycine max
Glyma.16G142300 2.0kb upstream 2.0kb upstream 2000 false Chr16: 30091467-30093466 Glycine max
Glyma.16G142300 2.0kb downstream 2.0kb downstream 7289 true Chr16: 30084178-30091466 Glycine max
Glyma.16G142300 2.0kb downstream 2.0kb downstream 2000 false Chr16: 30084178-30086177 Glycine max
Glyma.16G142300 5.0kb upstream 5.0kb upstream 10289 true Chr16: 30086178-30096466 Glycine max
Glyma.16G142300 5.0kb upstream 5.0kb upstream 5000 false Chr16: 30091467-30096466 Glycine max
Glyma.16G142300 5.0kb downstream 5.0kb downstream 10289 true Chr16: 30081178-30091466 Glycine max
Glyma.16G142300 5.0kb downstream 5.0kb downstream 5000 false Chr16: 30081178-30086177 Glycine max
Glyma.16G142300 10.0kb upstream 10.0kb upstream 15289 true Chr16: 30086178-30101466 Glycine max
Glyma.16G142300 10.0kb upstream 10.0kb upstream 10000 false Chr16: 30091467-30101466 Glycine max
Glyma.16G142300 10.0kb downstream 10.0kb downstream 15289 true Chr16: 30076178-30091466 Glycine max
Glyma.16G142300 10.0kb downstream 10.0kb downstream 10000 false Chr16: 30076178-30086177 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314760 5265 Fabidae View MSA
124069228 5270 Rosid View MSA
123744314 5271 Pentapetalae View MSA
122789645 5272 Eudicot View MSA
122043599 5273 Angiosperm View MSA
121344706 5274 Embryophyte View MSA
123427265 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.16708 0.0 7.17795    
cufflinks 7.82899 0.0 21.8967   High
cufflinks 1.58042 0.0 5.41176    
cufflinks 0.641931 0.0 2.35606   Low
cufflinks 1.48841 0.0 5.14594    
cufflinks 0.676523 0.0 2.47662   Low
cufflinks 4.19426 0.0 12.6563   High
cufflinks 1.64866 0.0 5.6327    
cufflinks 1.73563 0.0 5.90372    
cufflinks 1.365        
cufflinks 6.192     High  
cufflinks 0.835        
cufflinks 0.27       Low
cufflinks 0.101       Low
cufflinks 12.413     High High
cufflinks 5.181        
cufflinks 0.455       Low
cufflinks 2.199        
cufflinks 1.472        
cufflinks 3.77        
cufflinks 3.295        
cufflinks 2.956        
cufflinks 4.52        
cufflinks 3.693        
cufflinks 4.871        
cufflinks 1.017        

0 Strain