Gene : Glyma.16G143600 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR34058:SF1 - OXYGEN-EVOLVING ENHANCER PROTEIN 1-1, CHLOROPLASTIC-RELATED Genomic Order:  1436
Name:  ? Glyma.16G143600 Secondary Identifier:  ? PAC:30559259
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G143600 0.5kb upstream 0.5kb upstream 3099 true Chr16: 30379885-30382983 Glycine max
Glyma.16G143600 0.5kb upstream 0.5kb upstream 500 false Chr16: 30382484-30382983 Glycine max
Glyma.16G143600 0.5kb downstream 0.5kb downstream 3099 true Chr16: 30379385-30382483 Glycine max
Glyma.16G143600 0.5kb downstream 0.5kb downstream 500 false Chr16: 30379385-30379884 Glycine max
Glyma.16G143600 1.0kb upstream 1.0kb upstream 3599 true Chr16: 30379885-30383483 Glycine max
Glyma.16G143600 1.0kb upstream 1.0kb upstream 1000 false Chr16: 30382484-30383483 Glycine max
Glyma.16G143600 1.0kb downstream 1.0kb downstream 3599 true Chr16: 30378885-30382483 Glycine max
Glyma.16G143600 1.0kb downstream 1.0kb downstream 1000 false Chr16: 30378885-30379884 Glycine max
Glyma.16G143600 2.0kb upstream 2.0kb upstream 4599 true Chr16: 30379885-30384483 Glycine max
Glyma.16G143600 2.0kb upstream 2.0kb upstream 2000 false Chr16: 30382484-30384483 Glycine max
Glyma.16G143600 2.0kb downstream 2.0kb downstream 4599 true Chr16: 30377885-30382483 Glycine max
Glyma.16G143600 2.0kb downstream 2.0kb downstream 2000 false Chr16: 30377885-30379884 Glycine max
Glyma.16G143600 5.0kb upstream 5.0kb upstream 7599 true Chr16: 30379885-30387483 Glycine max
Glyma.16G143600 5.0kb upstream 5.0kb upstream 5000 false Chr16: 30382484-30387483 Glycine max
Glyma.16G143600 5.0kb downstream 5.0kb downstream 7599 true Chr16: 30374885-30382483 Glycine max
Glyma.16G143600 5.0kb downstream 5.0kb downstream 5000 false Chr16: 30374885-30379884 Glycine max
Glyma.16G143600 10.0kb upstream 10.0kb upstream 12599 true Chr16: 30379885-30392483 Glycine max
Glyma.16G143600 10.0kb upstream 10.0kb upstream 10000 false Chr16: 30382484-30392483 Glycine max
Glyma.16G143600 10.0kb downstream 10.0kb downstream 12599 true Chr16: 30369885-30382483 Glycine max
Glyma.16G143600 10.0kb downstream 10.0kb downstream 10000 false Chr16: 30369885-30379884 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310095 5265 Fabidae View MSA
124063467 5270 Rosid View MSA
123739417 5271 Pentapetalae View MSA
122788254 5272 Eudicot View MSA
122047967 5273 Angiosperm View MSA
121344212 5274 Embryophyte View MSA
123425295 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 198.494 0.0 716.21 High High
cufflinks 262.358 0.0 1022.08 High High
cufflinks 70.5997 0.0 207.685 High  
cufflinks 130.297 0.0 425.932 High  
cufflinks 13.0102 0.0 34.9207   Low
cufflinks 18.3436 0.0 48.9386    
cufflinks 54.0376 0.0 153.896 High  
cufflinks 84.5146 0.0 256.805 High  
cufflinks 8.66246 0.0 23.77   Low
cufflinks 136.583     High  
cufflinks 3.566        
cufflinks 79.357     High  
cufflinks 0.589       Low
cufflinks 0.437       Low
cufflinks 3.093        
cufflinks 363.531     High High
cufflinks 0.313       Low
cufflinks 86.875     High  
cufflinks 150.916     High  
cufflinks 456.733     High High
cufflinks 1.998        
cufflinks 379.042     High High
cufflinks 316.979     High High
cufflinks 2.156        
cufflinks 453.479     High High
cufflinks 0.65       Low

0 Strain