Gene : Glyma.16G143800 G. max Wm82.a2.v1
Defline:  (1 of 77) PF03000 - NPH3 family (NPH3) Genomic Order:  1438
Name:  ? Glyma.16G143800 Secondary Identifier:  ? PAC:30561010
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G143800 0.5kb upstream 0.5kb upstream 4679 true Chr16: 30398699-30403377 Glycine max
Glyma.16G143800 0.5kb upstream 0.5kb upstream 500 false Chr16: 30402878-30403377 Glycine max
Glyma.16G143800 0.5kb downstream 0.5kb downstream 4679 true Chr16: 30398199-30402877 Glycine max
Glyma.16G143800 0.5kb downstream 0.5kb downstream 500 false Chr16: 30398199-30398698 Glycine max
Glyma.16G143800 1.0kb upstream 1.0kb upstream 5179 true Chr16: 30398699-30403877 Glycine max
Glyma.16G143800 1.0kb upstream 1.0kb upstream 1000 false Chr16: 30402878-30403877 Glycine max
Glyma.16G143800 1.0kb downstream 1.0kb downstream 5179 true Chr16: 30397699-30402877 Glycine max
Glyma.16G143800 1.0kb downstream 1.0kb downstream 1000 false Chr16: 30397699-30398698 Glycine max
Glyma.16G143800 2.0kb upstream 2.0kb upstream 6179 true Chr16: 30398699-30404877 Glycine max
Glyma.16G143800 2.0kb upstream 2.0kb upstream 2000 false Chr16: 30402878-30404877 Glycine max
Glyma.16G143800 2.0kb downstream 2.0kb downstream 6179 true Chr16: 30396699-30402877 Glycine max
Glyma.16G143800 2.0kb downstream 2.0kb downstream 2000 false Chr16: 30396699-30398698 Glycine max
Glyma.16G143800 5.0kb upstream 5.0kb upstream 9179 true Chr16: 30398699-30407877 Glycine max
Glyma.16G143800 5.0kb upstream 5.0kb upstream 5000 false Chr16: 30402878-30407877 Glycine max
Glyma.16G143800 5.0kb downstream 5.0kb downstream 9179 true Chr16: 30393699-30402877 Glycine max
Glyma.16G143800 5.0kb downstream 5.0kb downstream 5000 false Chr16: 30393699-30398698 Glycine max
Glyma.16G143800 10.0kb upstream 10.0kb upstream 14179 true Chr16: 30398699-30412877 Glycine max
Glyma.16G143800 10.0kb upstream 10.0kb upstream 10000 false Chr16: 30402878-30412877 Glycine max
Glyma.16G143800 10.0kb downstream 10.0kb downstream 14179 true Chr16: 30388699-30402877 Glycine max
Glyma.16G143800 10.0kb downstream 10.0kb downstream 10000 false Chr16: 30388699-30398698 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302287 5265 Fabidae View MSA
124062136 5270 Rosid View MSA
123740597 5271 Pentapetalae View MSA
122793166 5272 Eudicot View MSA
122048903 5273 Angiosperm View MSA
121311163 5274 Embryophyte View MSA
123348497 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.90258 0.0 25.9832    
cufflinks 9.16202 0.0 33.8871   High
cufflinks 2.99016 0.0 11.9254   Low
cufflinks 7.87907 0.0 29.252    
cufflinks 4.36576 0.0 15.6972    
cufflinks 4.00623 0.0 14.4916   Low
cufflinks 5.83275 0.0 20.1221    
cufflinks 7.82784 0.0 29.2385    
cufflinks 6.16019 0.0 23.4254    
cufflinks 1.707        
cufflinks 0.901       Low
cufflinks 1.72        
cufflinks 1.062        
cufflinks 1.045        
cufflinks 0.35       Low
cufflinks 3.05       High
cufflinks 1.185        
cufflinks 1.949        
cufflinks 2.862        
cufflinks 2.6        
cufflinks 1.93        
cufflinks 3.109       High
cufflinks 2.955        
cufflinks 0.907       Low
cufflinks 2.674        
cufflinks 1.949        

0 Strain