Gene : Glyma.16G200200 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR11877//PTHR11877:SF22 - HYDROXYMETHYLGLUTARYL-COA SYNTHASE Genomic Order:  2002
Name:  ? Glyma.16G200200 Secondary Identifier:  ? PAC:30561161
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-5910 Glycine max pathologic  
Gmax PWY-922 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G200200 0.5kb upstream 0.5kb upstream 6965 true Chr16: 36127089-36134053 Glycine max
Glyma.16G200200 0.5kb upstream 0.5kb upstream 500 false Chr16: 36127089-36127588 Glycine max
Glyma.16G200200 0.5kb downstream 0.5kb downstream 6965 true Chr16: 36127589-36134553 Glycine max
Glyma.16G200200 0.5kb downstream 0.5kb downstream 500 false Chr16: 36134054-36134553 Glycine max
Glyma.16G200200 1.0kb upstream 1.0kb upstream 7465 true Chr16: 36126589-36134053 Glycine max
Glyma.16G200200 1.0kb upstream 1.0kb upstream 1000 false Chr16: 36126589-36127588 Glycine max
Glyma.16G200200 1.0kb downstream 1.0kb downstream 7465 true Chr16: 36127589-36135053 Glycine max
Glyma.16G200200 1.0kb downstream 1.0kb downstream 1000 false Chr16: 36134054-36135053 Glycine max
Glyma.16G200200 2.0kb upstream 2.0kb upstream 8465 true Chr16: 36125589-36134053 Glycine max
Glyma.16G200200 2.0kb upstream 2.0kb upstream 2000 false Chr16: 36125589-36127588 Glycine max
Glyma.16G200200 2.0kb downstream 2.0kb downstream 8465 true Chr16: 36127589-36136053 Glycine max
Glyma.16G200200 2.0kb downstream 2.0kb downstream 2000 false Chr16: 36134054-36136053 Glycine max
Glyma.16G200200 5.0kb upstream 5.0kb upstream 11465 true Chr16: 36122589-36134053 Glycine max
Glyma.16G200200 5.0kb upstream 5.0kb upstream 5000 false Chr16: 36122589-36127588 Glycine max
Glyma.16G200200 5.0kb downstream 5.0kb downstream 11465 true Chr16: 36127589-36139053 Glycine max
Glyma.16G200200 5.0kb downstream 5.0kb downstream 5000 false Chr16: 36134054-36139053 Glycine max
Glyma.16G200200 10.0kb upstream 10.0kb upstream 16465 true Chr16: 36117589-36134053 Glycine max
Glyma.16G200200 10.0kb upstream 10.0kb upstream 10000 false Chr16: 36117589-36127588 Glycine max
Glyma.16G200200 10.0kb downstream 10.0kb downstream 16465 true Chr16: 36127589-36144053 Glycine max
Glyma.16G200200 10.0kb downstream 10.0kb downstream 10000 false Chr16: 36134054-36144053 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122297184 5265 Fabidae View MSA
124035937 5270 Rosid View MSA
123746885 5271 Pentapetalae View MSA
122791824 5272 Eudicot View MSA
122042701 5273 Angiosperm View MSA
121346246 5274 Embryophyte View MSA
123424795 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.74112 0.0 17.2293    
cufflinks 4.09314 0.0 18.7666    
cufflinks 9.75996 0.0 35.56   High
cufflinks 6.29616 0.0 25.0273    
cufflinks 5.49596 0.0 19.2054    
cufflinks 7.72644 0.0 24.9842    
cufflinks 3.46522 0.0 10.6706   Low
cufflinks 6.92067 0.0 27.2524    
cufflinks 4.5284 0.0 20.0576    
cufflinks 0.608        
cufflinks 0.213       Low
cufflinks 1.034        
cufflinks 0.997        
cufflinks 0.796        
cufflinks 0.185       Low
cufflinks 1.001        
cufflinks 0.539        
cufflinks 2.95       High
cufflinks 0.687        
cufflinks 0.729        
cufflinks 0.33       Low
cufflinks 0.826        
cufflinks 1.227        
cufflinks 0.413        
cufflinks 0.909        
cufflinks 0.635        

0 Strain