Gene : Glyma.16G200400 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR21726:SF51 - GENOMIC DNA, CHROMOSOME 5, P1 CLONE:MTG10 Genomic Order:  2004
Name:  ? Glyma.16G200400 Secondary Identifier:  ? PAC:30559238
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G200400 0.5kb upstream 0.5kb upstream 4634 true Chr16: 36150773-36155406 Glycine max
Glyma.16G200400 0.5kb upstream 0.5kb upstream 500 false Chr16: 36150773-36151272 Glycine max
Glyma.16G200400 0.5kb downstream 0.5kb downstream 4634 true Chr16: 36151273-36155906 Glycine max
Glyma.16G200400 0.5kb downstream 0.5kb downstream 500 false Chr16: 36155407-36155906 Glycine max
Glyma.16G200400 1.0kb upstream 1.0kb upstream 5134 true Chr16: 36150273-36155406 Glycine max
Glyma.16G200400 1.0kb upstream 1.0kb upstream 1000 false Chr16: 36150273-36151272 Glycine max
Glyma.16G200400 1.0kb downstream 1.0kb downstream 5134 true Chr16: 36151273-36156406 Glycine max
Glyma.16G200400 1.0kb downstream 1.0kb downstream 1000 false Chr16: 36155407-36156406 Glycine max
Glyma.16G200400 2.0kb upstream 2.0kb upstream 6134 true Chr16: 36149273-36155406 Glycine max
Glyma.16G200400 2.0kb upstream 2.0kb upstream 2000 false Chr16: 36149273-36151272 Glycine max
Glyma.16G200400 2.0kb downstream 2.0kb downstream 6134 true Chr16: 36151273-36157406 Glycine max
Glyma.16G200400 2.0kb downstream 2.0kb downstream 2000 false Chr16: 36155407-36157406 Glycine max
Glyma.16G200400 5.0kb upstream 5.0kb upstream 9134 true Chr16: 36146273-36155406 Glycine max
Glyma.16G200400 5.0kb upstream 5.0kb upstream 5000 false Chr16: 36146273-36151272 Glycine max
Glyma.16G200400 5.0kb downstream 5.0kb downstream 9134 true Chr16: 36151273-36160406 Glycine max
Glyma.16G200400 5.0kb downstream 5.0kb downstream 5000 false Chr16: 36155407-36160406 Glycine max
Glyma.16G200400 10.0kb upstream 10.0kb upstream 14134 true Chr16: 36141273-36155406 Glycine max
Glyma.16G200400 10.0kb upstream 10.0kb upstream 10000 false Chr16: 36141273-36151272 Glycine max
Glyma.16G200400 10.0kb downstream 10.0kb downstream 14134 true Chr16: 36151273-36165406 Glycine max
Glyma.16G200400 10.0kb downstream 10.0kb downstream 10000 false Chr16: 36155407-36165406 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314975 5265 Fabidae View MSA
124062054 5270 Rosid View MSA
123749389 5271 Pentapetalae View MSA
122793525 5272 Eudicot View MSA
122045763 5273 Angiosperm View MSA
121310498 5274 Embryophyte View MSA
123347966 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.372066 0.0 1.34888   Low
cufflinks 2.90326 0.0 8.32075    
cufflinks 1.32794 0.0 4.23288    
cufflinks 4.37288 0.0 12.0071   High
cufflinks 1.31773 0.0 4.20356    
cufflinks 0.624696 0.0 2.18129    
cufflinks 7.48716 0.0 20.0325   High
cufflinks 0.911979 0.0 3.04196    
cufflinks 0.25941 0.0 0.95958 Low Low
cufflinks 2.32        
cufflinks 0.027     Low Low
cufflinks 2.224        
cufflinks 0.504        
cufflinks 0.717        
cufflinks 0.005     Low Low
cufflinks 2.06        
cufflinks 0.076        
cufflinks 1.614        
cufflinks 1.69        
cufflinks 1.274        
cufflinks 0.15        
cufflinks 1.986        
cufflinks 4.672       High
cufflinks 0.037     Low Low
cufflinks 2.03        
cufflinks 0.087        

0 Strain