Gene : Glyma.16G200500 G. max Wm82.a2.v1
Defline:  (1 of 7) PF04949 - Transcriptional activator Genomic Order:  2005
Name:  ? Glyma.16G200500 Secondary Identifier:  ? PAC:30561828
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G200500 0.5kb upstream 0.5kb upstream 4889 true Chr16: 36163525-36168413 Glycine max
Glyma.16G200500 0.5kb upstream 0.5kb upstream 500 false Chr16: 36167914-36168413 Glycine max
Glyma.16G200500 0.5kb downstream 0.5kb downstream 4889 true Chr16: 36163025-36167913 Glycine max
Glyma.16G200500 0.5kb downstream 0.5kb downstream 500 false Chr16: 36163025-36163524 Glycine max
Glyma.16G200500 1.0kb upstream 1.0kb upstream 5389 true Chr16: 36163525-36168913 Glycine max
Glyma.16G200500 1.0kb upstream 1.0kb upstream 1000 false Chr16: 36167914-36168913 Glycine max
Glyma.16G200500 1.0kb downstream 1.0kb downstream 5389 true Chr16: 36162525-36167913 Glycine max
Glyma.16G200500 1.0kb downstream 1.0kb downstream 1000 false Chr16: 36162525-36163524 Glycine max
Glyma.16G200500 2.0kb upstream 2.0kb upstream 6389 true Chr16: 36163525-36169913 Glycine max
Glyma.16G200500 2.0kb upstream 2.0kb upstream 2000 false Chr16: 36167914-36169913 Glycine max
Glyma.16G200500 2.0kb downstream 2.0kb downstream 6389 true Chr16: 36161525-36167913 Glycine max
Glyma.16G200500 2.0kb downstream 2.0kb downstream 2000 false Chr16: 36161525-36163524 Glycine max
Glyma.16G200500 5.0kb upstream 5.0kb upstream 9389 true Chr16: 36163525-36172913 Glycine max
Glyma.16G200500 5.0kb upstream 5.0kb upstream 5000 false Chr16: 36167914-36172913 Glycine max
Glyma.16G200500 5.0kb downstream 5.0kb downstream 9389 true Chr16: 36158525-36167913 Glycine max
Glyma.16G200500 5.0kb downstream 5.0kb downstream 5000 false Chr16: 36158525-36163524 Glycine max
Glyma.16G200500 10.0kb upstream 10.0kb upstream 14389 true Chr16: 36163525-36177913 Glycine max
Glyma.16G200500 10.0kb upstream 10.0kb upstream 10000 false Chr16: 36167914-36177913 Glycine max
Glyma.16G200500 10.0kb downstream 10.0kb downstream 14389 true Chr16: 36153525-36167913 Glycine max
Glyma.16G200500 10.0kb downstream 10.0kb downstream 10000 false Chr16: 36153525-36163524 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121618209 5273 Angiosperm View MSA
122255264 5265 Fabidae View MSA
123997060 5270 Rosid View MSA
123571416 5271 Pentapetalae View MSA
122606142 5272 Eudicot View MSA
120890318 5274 Embryophyte View MSA
123426204 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.42302 0.0 44.519    
cufflinks 5.13882 0.0 31.1073    
cufflinks 14.9596 0.0 71.6892   High
cufflinks 5.10681 0.0 30.9183    
cufflinks 4.63581 0.0 29.3723    
cufflinks 4.89562 0.0 27.9535    
cufflinks 5.62393 0.0 39.6752    
cufflinks 5.37972 0.0 32.3233    
cufflinks 5.42917 0.0 39.3744    
cufflinks 0.34        
cufflinks 0.71        
cufflinks 0.612        
cufflinks 0.261       Low
cufflinks 0.306        
cufflinks 0.858       High
cufflinks 0.702        
cufflinks 0.12       Low
cufflinks 0.559        
cufflinks 0.336        
cufflinks 0.922       High
cufflinks 0.656        
cufflinks 0.712        
cufflinks 0.411        
cufflinks 0.494        
cufflinks 0.874       High
cufflinks 0.376        

0 Strain