Gene : Glyma.16G207700 G. max Wm82.a2.v1
Defline:  (1 of 5) PF02900 - Catalytic LigB subunit of aromatic ring-opening dioxygenase (LigB) Genomic Order:  2077
Name:  ? Glyma.16G207700 Secondary Identifier:  ? PAC:30561149
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G207700 0.5kb upstream 0.5kb upstream 4001 true Chr16: 36739878-36743878 Glycine max
Glyma.16G207700 0.5kb upstream 0.5kb upstream 500 false Chr16: 36743379-36743878 Glycine max
Glyma.16G207700 0.5kb downstream 0.5kb downstream 4001 true Chr16: 36739378-36743378 Glycine max
Glyma.16G207700 0.5kb downstream 0.5kb downstream 500 false Chr16: 36739378-36739877 Glycine max
Glyma.16G207700 1.0kb upstream 1.0kb upstream 4501 true Chr16: 36739878-36744378 Glycine max
Glyma.16G207700 1.0kb upstream 1.0kb upstream 1000 false Chr16: 36743379-36744378 Glycine max
Glyma.16G207700 1.0kb downstream 1.0kb downstream 4501 true Chr16: 36738878-36743378 Glycine max
Glyma.16G207700 1.0kb downstream 1.0kb downstream 1000 false Chr16: 36738878-36739877 Glycine max
Glyma.16G207700 2.0kb upstream 2.0kb upstream 5501 true Chr16: 36739878-36745378 Glycine max
Glyma.16G207700 2.0kb upstream 2.0kb upstream 2000 false Chr16: 36743379-36745378 Glycine max
Glyma.16G207700 2.0kb downstream 2.0kb downstream 5501 true Chr16: 36737878-36743378 Glycine max
Glyma.16G207700 2.0kb downstream 2.0kb downstream 2000 false Chr16: 36737878-36739877 Glycine max
Glyma.16G207700 5.0kb upstream 5.0kb upstream 8501 true Chr16: 36739878-36748378 Glycine max
Glyma.16G207700 5.0kb upstream 5.0kb upstream 5000 false Chr16: 36743379-36748378 Glycine max
Glyma.16G207700 5.0kb downstream 5.0kb downstream 8501 true Chr16: 36734878-36743378 Glycine max
Glyma.16G207700 5.0kb downstream 5.0kb downstream 5000 false Chr16: 36734878-36739877 Glycine max
Glyma.16G207700 10.0kb upstream 10.0kb upstream 13501 true Chr16: 36739878-36753378 Glycine max
Glyma.16G207700 10.0kb upstream 10.0kb upstream 10000 false Chr16: 36743379-36753378 Glycine max
Glyma.16G207700 10.0kb downstream 10.0kb downstream 13501 true Chr16: 36729878-36743378 Glycine max
Glyma.16G207700 10.0kb downstream 10.0kb downstream 10000 false Chr16: 36729878-36739877 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122316476 5265 Fabidae View MSA
124061164 5270 Rosid View MSA
123748112 5271 Pentapetalae View MSA
122788148 5272 Eudicot View MSA
122046323 5273 Angiosperm View MSA
121350065 5274 Embryophyte View MSA
123426386 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.547541 0.0 2.06024    
cufflinks 1.76482 0.0 6.18872    
cufflinks 2.07106 0.0 7.14131    
cufflinks 0.135925 0.0 0.540836 Low Low
cufflinks 11.492 0.0 31.9521    
cufflinks 368.919 0.0 1402.16 High High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.338213 0.0 1.29802    
cufflinks 13.4703 0.0 36.9315    
cufflinks 0.531        
cufflinks 29.419     High High
cufflinks 0.547        
cufflinks 13.18     High  
cufflinks 4.478        
cufflinks 2.117        
cufflinks 0.883        
cufflinks 7.892     High  
cufflinks 0.131       Low
cufflinks 1.569        
cufflinks 0.778        
cufflinks 26.709     High High
cufflinks 0.903        
cufflinks 0.759        
cufflinks 34.198     High High
cufflinks 0.958        
cufflinks 59.275     High High

0 Strain